Hb_014834_140

Information

Type -
Description -
Location Contig14834: 85874-86455
Sequence    

Annotation

kegg
ID tcc:TCM_015942
description hypothetical protein
nr
ID XP_007039797.1
description Uncharacterized protein TCM_015942 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G4H5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_015942 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12183: 85912-87472 , PASA_asmbl_12184: 85912-87086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014834_140 0.0 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
2 Hb_003405_060 0.0891232563 - - -
3 Hb_086703_010 0.1065109572 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
4 Hb_004807_060 0.1215879645 - - -
5 Hb_001610_130 0.1276214566 - - 40S ribosomal protein S30 [Medicago truncatula]
6 Hb_003043_070 0.134207308 - - -
7 Hb_001057_050 0.1352162517 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
8 Hb_007441_270 0.137829869 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
9 Hb_006995_040 0.1400638498 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
10 Hb_000193_350 0.1413899756 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
11 Hb_000994_110 0.1451795963 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000656_340 0.1491476271 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
13 Hb_029888_020 0.149589884 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
14 Hb_000771_100 0.1539845149 - - Os06g0527300 [Oryza sativa Japonica Group]
15 Hb_000155_180 0.1567657293 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
16 Hb_005224_050 0.1582216804 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
17 Hb_007545_050 0.1586717358 - - -
18 Hb_000003_730 0.1591250693 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
19 Hb_182964_010 0.159393397 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
20 Hb_005367_010 0.1624588594 - - -

Gene co-expression network

sample Hb_014834_140 Hb_014834_140 Hb_003405_060 Hb_003405_060 Hb_014834_140--Hb_003405_060 Hb_086703_010 Hb_086703_010 Hb_014834_140--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_014834_140--Hb_004807_060 Hb_001610_130 Hb_001610_130 Hb_014834_140--Hb_001610_130 Hb_003043_070 Hb_003043_070 Hb_014834_140--Hb_003043_070 Hb_001057_050 Hb_001057_050 Hb_014834_140--Hb_001057_050 Hb_003405_060--Hb_086703_010 Hb_004502_020 Hb_004502_020 Hb_003405_060--Hb_004502_020 Hb_000155_180 Hb_000155_180 Hb_003405_060--Hb_000155_180 Hb_029888_020 Hb_029888_020 Hb_003405_060--Hb_029888_020 Hb_003405_060--Hb_004807_060 Hb_000771_100 Hb_000771_100 Hb_086703_010--Hb_000771_100 Hb_086703_010--Hb_003043_070 Hb_086703_010--Hb_000155_180 Hb_001269_320 Hb_001269_320 Hb_086703_010--Hb_001269_320 Hb_003011_040 Hb_003011_040 Hb_086703_010--Hb_003011_040 Hb_004807_060--Hb_001057_050 Hb_000193_350 Hb_000193_350 Hb_004807_060--Hb_000193_350 Hb_003058_220 Hb_003058_220 Hb_004807_060--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_004807_060--Hb_005224_050 Hb_000094_020 Hb_000094_020 Hb_004807_060--Hb_000094_020 Hb_000419_130 Hb_000419_130 Hb_001610_130--Hb_000419_130 Hb_001575_030 Hb_001575_030 Hb_001610_130--Hb_001575_030 Hb_001610_130--Hb_003058_220 Hb_001610_130--Hb_005224_050 Hb_003226_220 Hb_003226_220 Hb_001610_130--Hb_003226_220 Hb_003043_070--Hb_001269_320 Hb_000505_140 Hb_000505_140 Hb_003043_070--Hb_000505_140 Hb_003043_070--Hb_004502_020 Hb_002272_260 Hb_002272_260 Hb_003043_070--Hb_002272_260 Hb_000003_730 Hb_000003_730 Hb_003043_070--Hb_000003_730 Hb_001057_050--Hb_000193_350 Hb_102156_010 Hb_102156_010 Hb_001057_050--Hb_102156_010 Hb_000175_400 Hb_000175_400 Hb_001057_050--Hb_000175_400 Hb_017711_010 Hb_017711_010 Hb_001057_050--Hb_017711_010 Hb_002259_150 Hb_002259_150 Hb_001057_050--Hb_002259_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8806 13.4182 12.9355 79.9694 51.8864 166.629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.828 181.748 19.9945 25.4228 5.3042

CAGE analysis