Hb_004807_060

Information

Type -
Description -
Location Contig4807: 75545-89518
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44730: 78452-90659 , PASA_asmbl_44734: 81241-81443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004807_060 0.0 - - -
2 Hb_001057_050 0.0933164756 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
3 Hb_000193_350 0.1071641355 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
4 Hb_003058_220 0.108851572 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
5 Hb_005224_050 0.1211874766 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
6 Hb_014834_140 0.1215879645 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
7 Hb_000094_020 0.1245351566 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
8 Hb_086703_010 0.1257880773 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
9 Hb_000268_010 0.130989756 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007441_270 0.1328620691 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
11 Hb_029888_020 0.1339281305 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
12 Hb_004007_100 0.1390610527 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
13 Hb_001610_130 0.1392041903 - - 40S ribosomal protein S30 [Medicago truncatula]
14 Hb_017711_010 0.1399586603 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
15 Hb_000771_100 0.1408387916 - - Os06g0527300 [Oryza sativa Japonica Group]
16 Hb_000175_400 0.1413585942 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000948_190 0.146205615 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
18 Hb_003405_060 0.1463334387 - - -
19 Hb_001247_350 0.149146432 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
20 Hb_102156_010 0.1504095016 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004807_060 Hb_004807_060 Hb_001057_050 Hb_001057_050 Hb_004807_060--Hb_001057_050 Hb_000193_350 Hb_000193_350 Hb_004807_060--Hb_000193_350 Hb_003058_220 Hb_003058_220 Hb_004807_060--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_004807_060--Hb_005224_050 Hb_014834_140 Hb_014834_140 Hb_004807_060--Hb_014834_140 Hb_000094_020 Hb_000094_020 Hb_004807_060--Hb_000094_020 Hb_001057_050--Hb_000193_350 Hb_102156_010 Hb_102156_010 Hb_001057_050--Hb_102156_010 Hb_000175_400 Hb_000175_400 Hb_001057_050--Hb_000175_400 Hb_017711_010 Hb_017711_010 Hb_001057_050--Hb_017711_010 Hb_002259_150 Hb_002259_150 Hb_001057_050--Hb_002259_150 Hb_000193_350--Hb_000175_400 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_000193_350--Hb_017711_010 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090 Hb_000199_070 Hb_000199_070 Hb_003058_220--Hb_000199_070 Hb_003058_220--Hb_005224_050 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000645_190 Hb_000645_190 Hb_003058_220--Hb_000645_190 Hb_005224_050--Hb_017711_010 Hb_005224_050--Hb_000199_070 Hb_005224_050--Hb_003687_020 Hb_002293_030 Hb_002293_030 Hb_005224_050--Hb_002293_030 Hb_003405_060 Hb_003405_060 Hb_014834_140--Hb_003405_060 Hb_086703_010 Hb_086703_010 Hb_014834_140--Hb_086703_010 Hb_001610_130 Hb_001610_130 Hb_014834_140--Hb_001610_130 Hb_003043_070 Hb_003043_070 Hb_014834_140--Hb_003043_070 Hb_014834_140--Hb_001057_050 Hb_004297_100 Hb_004297_100 Hb_000094_020--Hb_004297_100 Hb_002316_060 Hb_002316_060 Hb_000094_020--Hb_002316_060 Hb_003746_060 Hb_003746_060 Hb_000094_020--Hb_003746_060 Hb_005611_010 Hb_005611_010 Hb_000094_020--Hb_005611_010 Hb_005496_030 Hb_005496_030 Hb_000094_020--Hb_005496_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.33 21.2878 10.5105 36.2848 28.1733 118.77
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.8416 136.666 29.1479 9.3354 3.81014

CAGE analysis