Hb_003405_060

Information

Type -
Description -
Location Contig3405: 79121-80171
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35619: 79081-79743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003405_060 0.0 - - -
2 Hb_014834_140 0.0891232563 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
3 Hb_086703_010 0.0978138016 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
4 Hb_004502_020 0.1423244241 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
5 Hb_000155_180 0.1431429658 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
6 Hb_029888_020 0.143963227 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
7 Hb_004807_060 0.1463334387 - - -
8 Hb_003043_070 0.1487218985 - - -
9 Hb_082407_010 0.149236294 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
10 Hb_140543_010 0.1520553396 - - -
11 Hb_003226_220 0.1555815614 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
12 Hb_000656_340 0.155944546 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
13 Hb_000771_100 0.1565516417 - - Os06g0527300 [Oryza sativa Japonica Group]
14 Hb_000268_010 0.1567583095 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001754_070 0.160762938 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
16 Hb_004223_220 0.1611471431 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
17 Hb_000505_140 0.1621422083 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
18 Hb_116420_030 0.1622442969 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
19 Hb_001610_130 0.1622568996 - - 40S ribosomal protein S30 [Medicago truncatula]
20 Hb_003011_040 0.162392965 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_003405_060 Hb_003405_060 Hb_014834_140 Hb_014834_140 Hb_003405_060--Hb_014834_140 Hb_086703_010 Hb_086703_010 Hb_003405_060--Hb_086703_010 Hb_004502_020 Hb_004502_020 Hb_003405_060--Hb_004502_020 Hb_000155_180 Hb_000155_180 Hb_003405_060--Hb_000155_180 Hb_029888_020 Hb_029888_020 Hb_003405_060--Hb_029888_020 Hb_004807_060 Hb_004807_060 Hb_003405_060--Hb_004807_060 Hb_014834_140--Hb_086703_010 Hb_014834_140--Hb_004807_060 Hb_001610_130 Hb_001610_130 Hb_014834_140--Hb_001610_130 Hb_003043_070 Hb_003043_070 Hb_014834_140--Hb_003043_070 Hb_001057_050 Hb_001057_050 Hb_014834_140--Hb_001057_050 Hb_000771_100 Hb_000771_100 Hb_086703_010--Hb_000771_100 Hb_086703_010--Hb_003043_070 Hb_086703_010--Hb_000155_180 Hb_001269_320 Hb_001269_320 Hb_086703_010--Hb_001269_320 Hb_003011_040 Hb_003011_040 Hb_086703_010--Hb_003011_040 Hb_000505_140 Hb_000505_140 Hb_004502_020--Hb_000505_140 Hb_031089_040 Hb_031089_040 Hb_004502_020--Hb_031089_040 Hb_004502_020--Hb_000155_180 Hb_000003_730 Hb_000003_730 Hb_004502_020--Hb_000003_730 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_032202_090 Hb_032202_090 Hb_004502_020--Hb_032202_090 Hb_001377_180 Hb_001377_180 Hb_000155_180--Hb_001377_180 Hb_000155_180--Hb_000771_100 Hb_000155_180--Hb_003011_040 Hb_002272_260 Hb_002272_260 Hb_000155_180--Hb_002272_260 Hb_029888_020--Hb_086703_010 Hb_029888_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_029888_020--Hb_003746_060 Hb_000193_350 Hb_000193_350 Hb_029888_020--Hb_000193_350 Hb_017711_010 Hb_017711_010 Hb_029888_020--Hb_017711_010 Hb_004502_080 Hb_004502_080 Hb_029888_020--Hb_004502_080 Hb_004807_060--Hb_001057_050 Hb_004807_060--Hb_000193_350 Hb_003058_220 Hb_003058_220 Hb_004807_060--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_004807_060--Hb_005224_050 Hb_000094_020 Hb_000094_020 Hb_004807_060--Hb_000094_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.75925 1.91311 3.13945 13.1698 8.46254 21.6351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9904 30.6431 2.33809 2.5341 2.57728

CAGE analysis