Hb_004502_080

Information

Type -
Description -
Location Contig4502: 47108-50392
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_494089
description hypothetical protein
nr
ID KDP23745.1
description hypothetical protein JCGZ_23578 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23578 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43171: 9871-50195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004502_080 0.0 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
2 Hb_000175_040 0.1402032075 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
3 Hb_029888_020 0.1436208167 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
4 Hb_003057_050 0.153377972 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
5 Hb_003057_130 0.1544336704 - - -
6 Hb_019033_010 0.1551362796 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
7 Hb_025246_010 0.1590160817 - - -
8 Hb_004545_160 0.1723293704 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
9 Hb_000562_080 0.1789470453 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000453_210 0.1797280992 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
11 Hb_012395_100 0.180554769 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
12 Hb_000699_110 0.1821448004 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
13 Hb_002234_210 0.1885448911 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
14 Hb_000788_120 0.1900041731 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
15 Hb_008557_020 0.1902581313 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
16 Hb_001047_140 0.1907995305 - - -
17 Hb_036369_010 0.1915101128 - - -
18 Hb_004958_050 0.1944092591 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
19 Hb_002233_110 0.1953369623 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
20 Hb_003058_070 0.1954622678 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]

Gene co-expression network

sample Hb_004502_080 Hb_004502_080 Hb_000175_040 Hb_000175_040 Hb_004502_080--Hb_000175_040 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_019033_010 Hb_019033_010 Hb_004502_080--Hb_019033_010 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010 Hb_000175_040--Hb_003057_130 Hb_000175_040--Hb_025246_010 Hb_000699_110 Hb_000699_110 Hb_000175_040--Hb_000699_110 Hb_000788_120 Hb_000788_120 Hb_000175_040--Hb_000788_120 Hb_007625_020 Hb_007625_020 Hb_000175_040--Hb_007625_020 Hb_086703_010 Hb_086703_010 Hb_029888_020--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_029888_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_029888_020--Hb_003746_060 Hb_000193_350 Hb_000193_350 Hb_029888_020--Hb_000193_350 Hb_017711_010 Hb_017711_010 Hb_029888_020--Hb_017711_010 Hb_003057_050--Hb_025246_010 Hb_004607_140 Hb_004607_140 Hb_003057_050--Hb_004607_140 Hb_017895_050 Hb_017895_050 Hb_003057_050--Hb_017895_050 Hb_004117_290 Hb_004117_290 Hb_003057_050--Hb_004117_290 Hb_000617_320 Hb_000617_320 Hb_003057_050--Hb_000617_320 Hb_000479_180 Hb_000479_180 Hb_003057_050--Hb_000479_180 Hb_003057_130--Hb_025246_010 Hb_003057_130--Hb_000788_120 Hb_012305_060 Hb_012305_060 Hb_003057_130--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_003057_130--Hb_000284_010 Hb_000005_030 Hb_000005_030 Hb_003057_130--Hb_000005_030 Hb_019033_010--Hb_000699_110 Hb_001437_050 Hb_001437_050 Hb_019033_010--Hb_001437_050 Hb_019033_010--Hb_000175_040 Hb_068804_150 Hb_068804_150 Hb_019033_010--Hb_068804_150 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_025246_010--Hb_000699_110 Hb_000984_190 Hb_000984_190 Hb_025246_010--Hb_000984_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29347 0.238752 0.437442 0.148311 1.19195 2.32484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.12 3.3307 0.245801 0.254828 0.136136

CAGE analysis