Hb_074197_010

Information

Type -
Description -
Location Contig74197: 6206-11764
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08050g
description STEROL-4ALPHA-METHYL OXIDASE 1-1 family protein
nr
ID XP_012087086.1
description PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
swissprot
ID Q8L7W5
description Methylsterol monooxygenase 1-1 OS=Arabidopsis thaliana GN=SMO1-1 PE=1 SV=1
trembl
ID A0A067JRW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20744 PE=4 SV=1
Gene Ontology
ID GO:0016021
description methylsterol monooxygenase 1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56464: 6310-11837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074197_010 0.0 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
2 Hb_002603_130 0.1721429687 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
3 Hb_005892_060 0.1737247449 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
4 Hb_019033_010 0.1755715652 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
5 Hb_002301_290 0.1778245681 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
6 Hb_026428_010 0.1820471465 - - copper transport protein ATOX1 [Hevea brasiliensis]
7 Hb_002471_100 0.1898366215 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
8 Hb_000699_110 0.2011613075 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
9 Hb_001373_150 0.203071002 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
10 Hb_010883_100 0.2039810351 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
11 Hb_000032_240 0.2041125457 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001035_040 0.2094363656 - - unnamed protein product [Coffea canephora]
13 Hb_003207_110 0.2164525775 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
14 Hb_006501_110 0.2174927044 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
15 Hb_004787_090 0.2184310293 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
16 Hb_006570_070 0.2186192464 - - cyclophilin [Hevea brasiliensis]
17 Hb_005396_040 0.2190371211 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001623_240 0.2205657456 - - hypothetical protein VITISV_004933 [Vitis vinifera]
19 Hb_000207_380 0.221047369 - - sucrose transporter 6 [Hevea brasiliensis]
20 Hb_000331_440 0.2210611316 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]

Gene co-expression network

sample Hb_074197_010 Hb_074197_010 Hb_002603_130 Hb_002603_130 Hb_074197_010--Hb_002603_130 Hb_005892_060 Hb_005892_060 Hb_074197_010--Hb_005892_060 Hb_019033_010 Hb_019033_010 Hb_074197_010--Hb_019033_010 Hb_002301_290 Hb_002301_290 Hb_074197_010--Hb_002301_290 Hb_026428_010 Hb_026428_010 Hb_074197_010--Hb_026428_010 Hb_002471_100 Hb_002471_100 Hb_074197_010--Hb_002471_100 Hb_000032_240 Hb_000032_240 Hb_002603_130--Hb_000032_240 Hb_006501_110 Hb_006501_110 Hb_002603_130--Hb_006501_110 Hb_000982_070 Hb_000982_070 Hb_002603_130--Hb_000982_070 Hb_000207_380 Hb_000207_380 Hb_002603_130--Hb_000207_380 Hb_000139_330 Hb_000139_330 Hb_002603_130--Hb_000139_330 Hb_000699_110 Hb_000699_110 Hb_005892_060--Hb_000699_110 Hb_002226_030 Hb_002226_030 Hb_005892_060--Hb_002226_030 Hb_002900_140 Hb_002900_140 Hb_005892_060--Hb_002900_140 Hb_005892_060--Hb_002301_290 Hb_000997_270 Hb_000997_270 Hb_005892_060--Hb_000997_270 Hb_019033_010--Hb_000699_110 Hb_004502_080 Hb_004502_080 Hb_019033_010--Hb_004502_080 Hb_001437_050 Hb_001437_050 Hb_019033_010--Hb_001437_050 Hb_000175_040 Hb_000175_040 Hb_019033_010--Hb_000175_040 Hb_068804_150 Hb_068804_150 Hb_019033_010--Hb_068804_150 Hb_001373_150 Hb_001373_150 Hb_002301_290--Hb_001373_150 Hb_002301_290--Hb_002471_100 Hb_008554_020 Hb_008554_020 Hb_002301_290--Hb_008554_020 Hb_000390_200 Hb_000390_200 Hb_002301_290--Hb_000390_200 Hb_004310_030 Hb_004310_030 Hb_002301_290--Hb_004310_030 Hb_002301_290--Hb_006501_110 Hb_000803_050 Hb_000803_050 Hb_026428_010--Hb_000803_050 Hb_001035_040 Hb_001035_040 Hb_026428_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_026428_010--Hb_007120_070 Hb_000175_610 Hb_000175_610 Hb_026428_010--Hb_000175_610 Hb_000188_130 Hb_000188_130 Hb_026428_010--Hb_000188_130 Hb_000107_070 Hb_000107_070 Hb_026428_010--Hb_000107_070 Hb_002471_100--Hb_001373_150 Hb_000072_070 Hb_000072_070 Hb_002471_100--Hb_000072_070 Hb_035273_030 Hb_035273_030 Hb_002471_100--Hb_035273_030 Hb_011316_100 Hb_011316_100 Hb_002471_100--Hb_011316_100 Hb_002471_100--Hb_005892_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
135.869 10.4787 30.2804 33.34 24.8992 29.424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
287.268 64.7043 36.1367 8.45209 16.2123

CAGE analysis