Hb_000390_200

Information

Type -
Description -
Location Contig390: 221318-226549
Sequence    

Annotation

kegg
ID tcc:TCM_025518
description Plasma membrane isoform 1
nr
ID XP_012070235.1
description PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02553 PE=4 SV=1
Gene Ontology
ID GO:0005783
description plasma membrane isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39110: 221319-226532 , PASA_asmbl_39112: 222541-222717 , PASA_asmbl_39113: 225248-225389 , PASA_asmbl_39114: 225783-226151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_200 0.0 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
2 Hb_000179_170 0.1283382322 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
3 Hb_001416_010 0.1297046548 - - Thioredoxin H-type, putative [Ricinus communis]
4 Hb_006501_110 0.1341664295 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
5 Hb_004899_050 0.1365776712 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
6 Hb_002301_290 0.1401696424 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_011310_190 0.1418484061 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
8 Hb_002301_280 0.1450912637 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
9 Hb_003688_130 0.1464255133 - - phosphoserine phosphatase, putative [Ricinus communis]
10 Hb_008554_020 0.1491180292 - - -
11 Hb_001002_040 0.1510930573 - - PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]
12 Hb_004310_030 0.1517869953 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
13 Hb_033153_020 0.1519840217 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
14 Hb_000116_440 0.1527573363 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
15 Hb_001102_140 0.1528422672 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
16 Hb_004108_080 0.1536232812 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
17 Hb_001221_410 0.1540954829 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
18 Hb_000567_030 0.1559370258 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
19 Hb_001009_040 0.1566148523 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
20 Hb_003878_010 0.1566682612 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_200 Hb_000390_200 Hb_000179_170 Hb_000179_170 Hb_000390_200--Hb_000179_170 Hb_001416_010 Hb_001416_010 Hb_000390_200--Hb_001416_010 Hb_006501_110 Hb_006501_110 Hb_000390_200--Hb_006501_110 Hb_004899_050 Hb_004899_050 Hb_000390_200--Hb_004899_050 Hb_002301_290 Hb_002301_290 Hb_000390_200--Hb_002301_290 Hb_011310_190 Hb_011310_190 Hb_000390_200--Hb_011310_190 Hb_076787_010 Hb_076787_010 Hb_000179_170--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_000179_170--Hb_022137_060 Hb_000529_160 Hb_000529_160 Hb_000179_170--Hb_000529_160 Hb_002400_220 Hb_002400_220 Hb_000179_170--Hb_002400_220 Hb_150360_030 Hb_150360_030 Hb_000179_170--Hb_150360_030 Hb_001135_050 Hb_001135_050 Hb_000179_170--Hb_001135_050 Hb_005288_190 Hb_005288_190 Hb_001416_010--Hb_005288_190 Hb_001454_400 Hb_001454_400 Hb_001416_010--Hb_001454_400 Hb_007875_030 Hb_007875_030 Hb_001416_010--Hb_007875_030 Hb_002601_110 Hb_002601_110 Hb_001416_010--Hb_002601_110 Hb_003878_010 Hb_003878_010 Hb_001416_010--Hb_003878_010 Hb_003544_020 Hb_003544_020 Hb_001416_010--Hb_003544_020 Hb_000481_020 Hb_000481_020 Hb_006501_110--Hb_000481_020 Hb_004787_090 Hb_004787_090 Hb_006501_110--Hb_004787_090 Hb_000982_070 Hb_000982_070 Hb_006501_110--Hb_000982_070 Hb_004659_120 Hb_004659_120 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090 Hb_007002_030 Hb_007002_030 Hb_004899_050--Hb_007002_030 Hb_000053_100 Hb_000053_100 Hb_004899_050--Hb_000053_100 Hb_002596_040 Hb_002596_040 Hb_004899_050--Hb_002596_040 Hb_002893_080 Hb_002893_080 Hb_004899_050--Hb_002893_080 Hb_007317_180 Hb_007317_180 Hb_004899_050--Hb_007317_180 Hb_000994_120 Hb_000994_120 Hb_004899_050--Hb_000994_120 Hb_001373_150 Hb_001373_150 Hb_002301_290--Hb_001373_150 Hb_002471_100 Hb_002471_100 Hb_002301_290--Hb_002471_100 Hb_008554_020 Hb_008554_020 Hb_002301_290--Hb_008554_020 Hb_004310_030 Hb_004310_030 Hb_002301_290--Hb_004310_030 Hb_002301_290--Hb_006501_110 Hb_007254_040 Hb_007254_040 Hb_011310_190--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_011310_190--Hb_032717_080 Hb_005398_030 Hb_005398_030 Hb_011310_190--Hb_005398_030 Hb_011310_190--Hb_007317_180 Hb_001221_410 Hb_001221_410 Hb_011310_190--Hb_001221_410 Hb_000103_090 Hb_000103_090 Hb_011310_190--Hb_000103_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.443 38.9728 40.5798 134.61 101.457 139.504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
308.644 97.3327 52.33 52.8977 47.8011

CAGE analysis