Hb_000982_070

Information

Type -
Description -
Location Contig982: 127848-134912
Sequence    

Annotation

kegg
ID tcc:TCM_005516
description NAD(P)-binding Rossmann-fold superfamily protein
nr
ID CBI38845.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q40316
description Vestitone reductase OS=Medicago sativa PE=1 SV=1
trembl
ID A0A068VAE3
description Coffea canephora DH200=94 genomic scaffold, scaffold_180 OS=Coffea canephora GN=GSCOC_T00003886001 PE=4 SV=1
Gene Ontology
ID GO:0045552
description vestitone reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_001135_080 0.1285441709 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
3 Hb_006501_110 0.1330066972 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
4 Hb_001922_190 0.1422686576 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
5 Hb_000481_020 0.1426476962 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
6 Hb_000907_090 0.1502574994 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_003126_090 0.1506279576 - - Rop1 [Hevea brasiliensis]
8 Hb_001437_220 0.1509734596 - - Transmembrane protein, putative [Ricinus communis]
9 Hb_003050_230 0.1511201834 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000243_080 0.1523152719 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
11 Hb_000995_040 0.1524688759 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005433_040 0.1532122395 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
13 Hb_003777_180 0.15417291 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
14 Hb_004994_260 0.1580235248 - - Remorin, putative [Ricinus communis]
15 Hb_002030_040 0.1582547027 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
16 Hb_000987_070 0.1591613811 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
17 Hb_002875_080 0.1593109658 - - protein with unknown function [Ricinus communis]
18 Hb_002214_050 0.1593565024 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
19 Hb_000207_380 0.1594497343 - - sucrose transporter 6 [Hevea brasiliensis]
20 Hb_010483_020 0.1596038052 - - latex allergen [Hevea brasiliensis]

Gene co-expression network

sample Hb_000982_070 Hb_000982_070 Hb_001135_080 Hb_001135_080 Hb_000982_070--Hb_001135_080 Hb_006501_110 Hb_006501_110 Hb_000982_070--Hb_006501_110 Hb_001922_190 Hb_001922_190 Hb_000982_070--Hb_001922_190 Hb_000481_020 Hb_000481_020 Hb_000982_070--Hb_000481_020 Hb_000907_090 Hb_000907_090 Hb_000982_070--Hb_000907_090 Hb_003126_090 Hb_003126_090 Hb_000982_070--Hb_003126_090 Hb_001105_070 Hb_001105_070 Hb_001135_080--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_001135_080--Hb_000496_060 Hb_007926_060 Hb_007926_060 Hb_001135_080--Hb_007926_060 Hb_001882_070 Hb_001882_070 Hb_001135_080--Hb_001882_070 Hb_005433_040 Hb_005433_040 Hb_001135_080--Hb_005433_040 Hb_002234_070 Hb_002234_070 Hb_001135_080--Hb_002234_070 Hb_006501_110--Hb_000481_020 Hb_004787_090 Hb_004787_090 Hb_006501_110--Hb_004787_090 Hb_000390_200 Hb_000390_200 Hb_006501_110--Hb_000390_200 Hb_004659_120 Hb_004659_120 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090 Hb_010483_020 Hb_010483_020 Hb_001922_190--Hb_010483_020 Hb_002875_080 Hb_002875_080 Hb_001922_190--Hb_002875_080 Hb_001922_190--Hb_000481_020 Hb_001922_190--Hb_005433_040 Hb_001700_030 Hb_001700_030 Hb_001922_190--Hb_001700_030 Hb_003777_180 Hb_003777_180 Hb_000481_020--Hb_003777_180 Hb_007766_010 Hb_007766_010 Hb_000481_020--Hb_007766_010 Hb_000184_040 Hb_000184_040 Hb_000481_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000481_020--Hb_006120_200 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_004994_260 Hb_004994_260 Hb_000907_090--Hb_004994_260 Hb_002214_050 Hb_002214_050 Hb_000907_090--Hb_002214_050 Hb_004738_010 Hb_004738_010 Hb_000907_090--Hb_004738_010 Hb_162275_030 Hb_162275_030 Hb_000907_090--Hb_162275_030 Hb_010344_040 Hb_010344_040 Hb_000907_090--Hb_010344_040 Hb_002735_060 Hb_002735_060 Hb_000907_090--Hb_002735_060 Hb_033594_110 Hb_033594_110 Hb_003126_090--Hb_033594_110 Hb_000934_250 Hb_000934_250 Hb_003126_090--Hb_000934_250 Hb_001016_030 Hb_001016_030 Hb_003126_090--Hb_001016_030 Hb_001318_250 Hb_001318_250 Hb_003126_090--Hb_001318_250 Hb_065525_020 Hb_065525_020 Hb_003126_090--Hb_065525_020 Hb_002830_020 Hb_002830_020 Hb_003126_090--Hb_002830_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6924 1.50664 1.79464 10.074 5.43009 7.45186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9599 13.2347 9.63618 0.813209 3.57016

CAGE analysis