Hb_006501_110

Information

Type -
Description -
Location Contig6501: 80360-84698
Sequence    

Annotation

kegg
ID rcu:RCOM_1049920
description Hyoscyamine 6-dioxygenase, putative (EC:1.14.11.23)
nr
ID XP_012076885.1
description PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
swissprot
ID Q84MB6
description Probable 2-oxoglutarate-dependent dioxygenase At3g49630 OS=Arabidopsis thaliana GN=At3g50210 PE=2 SV=1
trembl
ID A0A067KPS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07380 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable 2-oxoglutarate-dependent dioxygenase at3g49630 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52534: 80365-84605 , PASA_asmbl_52535: 80551-80807 , PASA_asmbl_52536: 80365-84581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_110 0.0 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
2 Hb_000481_020 0.1288397747 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
3 Hb_004787_090 0.1299340773 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
4 Hb_000982_070 0.1330066972 - - unnamed protein product [Vitis vinifera]
5 Hb_000390_200 0.1341664295 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
6 Hb_004659_120 0.135841481 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
7 Hb_000723_090 0.1365275836 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005271_170 0.1386769344 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
9 Hb_002681_020 0.1402440694 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_001623_240 0.1406278019 - - hypothetical protein VITISV_004933 [Vitis vinifera]
11 Hb_001221_410 0.1409089628 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
12 Hb_000041_080 0.1409262189 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_000179_170 0.1419181243 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
14 Hb_002447_030 0.1432188898 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
15 Hb_001136_110 0.1446709629 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]
16 Hb_046157_020 0.1453688921 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
17 Hb_000184_040 0.1454153395 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
18 Hb_010483_020 0.1458214569 - - latex allergen [Hevea brasiliensis]
19 Hb_157022_020 0.1465544447 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
20 Hb_002301_290 0.1466194276 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006501_110 Hb_006501_110 Hb_000481_020 Hb_000481_020 Hb_006501_110--Hb_000481_020 Hb_004787_090 Hb_004787_090 Hb_006501_110--Hb_004787_090 Hb_000982_070 Hb_000982_070 Hb_006501_110--Hb_000982_070 Hb_000390_200 Hb_000390_200 Hb_006501_110--Hb_000390_200 Hb_004659_120 Hb_004659_120 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090 Hb_003777_180 Hb_003777_180 Hb_000481_020--Hb_003777_180 Hb_007766_010 Hb_007766_010 Hb_000481_020--Hb_007766_010 Hb_000184_040 Hb_000184_040 Hb_000481_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000481_020--Hb_006120_200 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_048141_010 Hb_048141_010 Hb_004787_090--Hb_048141_010 Hb_004787_090--Hb_004659_120 Hb_008847_010 Hb_008847_010 Hb_004787_090--Hb_008847_010 Hb_023226_090 Hb_023226_090 Hb_004787_090--Hb_023226_090 Hb_005271_170 Hb_005271_170 Hb_004787_090--Hb_005271_170 Hb_001135_080 Hb_001135_080 Hb_000982_070--Hb_001135_080 Hb_001922_190 Hb_001922_190 Hb_000982_070--Hb_001922_190 Hb_000982_070--Hb_000481_020 Hb_000907_090 Hb_000907_090 Hb_000982_070--Hb_000907_090 Hb_003126_090 Hb_003126_090 Hb_000982_070--Hb_003126_090 Hb_000179_170 Hb_000179_170 Hb_000390_200--Hb_000179_170 Hb_001416_010 Hb_001416_010 Hb_000390_200--Hb_001416_010 Hb_004899_050 Hb_004899_050 Hb_000390_200--Hb_004899_050 Hb_002301_290 Hb_002301_290 Hb_000390_200--Hb_002301_290 Hb_011310_190 Hb_011310_190 Hb_000390_200--Hb_011310_190 Hb_001205_090 Hb_001205_090 Hb_004659_120--Hb_001205_090 Hb_004659_120--Hb_000184_040 Hb_004659_120--Hb_023226_090 Hb_006831_010 Hb_006831_010 Hb_004659_120--Hb_006831_010 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_010174_120 Hb_010174_120 Hb_004659_120--Hb_010174_120 Hb_000465_040 Hb_000465_040 Hb_000723_090--Hb_000465_040 Hb_002105_090 Hb_002105_090 Hb_000723_090--Hb_002105_090 Hb_000500_130 Hb_000500_130 Hb_000723_090--Hb_000500_130 Hb_000316_110 Hb_000316_110 Hb_000723_090--Hb_000316_110 Hb_159558_030 Hb_159558_030 Hb_000723_090--Hb_159558_030 Hb_002400_220 Hb_002400_220 Hb_000723_090--Hb_002400_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.2603 8.79931 11.7648 44.9439 54.3967 46.3799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.813 52.1596 46.0028 12.1293 10.1418

CAGE analysis