Hb_005271_170

Information

Type -
Description -
Location Contig5271: 115154-119412
Sequence    

Annotation

kegg
ID rcu:RCOM_1686110
description hypothetical protein
nr
ID XP_010661018.1
description PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
swissprot
ID F4I214
description Tetraspanin-10 OS=Arabidopsis thaliana GN=TET10 PE=2 SV=1
trembl
ID B9RC82
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1686110 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-10 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47062: 115123-115970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_170 0.0 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
2 Hb_001047_010 0.1115909495 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000184_040 0.1121551398 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
4 Hb_023988_020 0.1192277579 - - PREDICTED: transmembrane protein 19 [Prunus mume]
5 Hb_003453_010 0.1194592193 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002400_220 0.1198379084 - - Vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_001269_150 0.1206113115 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
8 Hb_001002_040 0.1221801549 - - PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]
9 Hb_000316_110 0.1263422377 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
10 Hb_002518_250 0.1302167752 - - conserved hypothetical protein 10 [Hevea brasiliensis]
11 Hb_001437_040 0.1304508869 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
12 Hb_000028_050 0.1362831319 - - aldose-1-epimerase, putative [Ricinus communis]
13 Hb_000723_090 0.1364276412 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027892_060 0.1386000227 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
15 Hb_006501_110 0.1386769344 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
16 Hb_000003_650 0.1400806291 - - malic enzyme, putative [Ricinus communis]
17 Hb_000179_170 0.1401973269 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
18 Hb_011174_010 0.1407402705 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
19 Hb_004659_120 0.143641932 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
20 Hb_118977_020 0.1439212802 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]

Gene co-expression network

sample Hb_005271_170 Hb_005271_170 Hb_001047_010 Hb_001047_010 Hb_005271_170--Hb_001047_010 Hb_000184_040 Hb_000184_040 Hb_005271_170--Hb_000184_040 Hb_023988_020 Hb_023988_020 Hb_005271_170--Hb_023988_020 Hb_003453_010 Hb_003453_010 Hb_005271_170--Hb_003453_010 Hb_002400_220 Hb_002400_220 Hb_005271_170--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_005271_170--Hb_001269_150 Hb_001047_010--Hb_000184_040 Hb_003086_110 Hb_003086_110 Hb_001047_010--Hb_003086_110 Hb_118977_020 Hb_118977_020 Hb_001047_010--Hb_118977_020 Hb_007166_050 Hb_007166_050 Hb_001047_010--Hb_007166_050 Hb_000272_100 Hb_000272_100 Hb_001047_010--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_001047_010--Hb_001437_040 Hb_000762_020 Hb_000762_020 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_000920_140 Hb_000920_140 Hb_023988_020--Hb_000920_140 Hb_001696_030 Hb_001696_030 Hb_023988_020--Hb_001696_030 Hb_004032_440 Hb_004032_440 Hb_023988_020--Hb_004032_440 Hb_000376_110 Hb_000376_110 Hb_023988_020--Hb_000376_110 Hb_017895_050 Hb_017895_050 Hb_003453_010--Hb_017895_050 Hb_003453_010--Hb_001437_040 Hb_002518_250 Hb_002518_250 Hb_003453_010--Hb_002518_250 Hb_027892_060 Hb_027892_060 Hb_003453_010--Hb_027892_060 Hb_000984_190 Hb_000984_190 Hb_003453_010--Hb_000984_190 Hb_098709_010 Hb_098709_010 Hb_003453_010--Hb_098709_010 Hb_159558_030 Hb_159558_030 Hb_002400_220--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_002400_220--Hb_000500_130 Hb_007441_340 Hb_007441_340 Hb_002400_220--Hb_007441_340 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_002400_220--Hb_001269_150 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170 Hb_001269_150--Hb_007441_340 Hb_001493_100 Hb_001493_100 Hb_001269_150--Hb_001493_100 Hb_000172_120 Hb_000172_120 Hb_001269_150--Hb_000172_120 Hb_000732_260 Hb_000732_260 Hb_001269_150--Hb_000732_260 Hb_004813_010 Hb_004813_010 Hb_001269_150--Hb_004813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7366 1.79157 3.37246 7.4629 15.6047 23.6939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8227 13.3812 7.78541 2.06048 1.84293

CAGE analysis