Hb_000920_140

Information

Type -
Description -
Location Contig920: 78481-81234
Sequence    

Annotation

kegg
ID rcu:RCOM_1453030
description annexin, putative
nr
ID AJJ90393.1
description annexin [Manihot esculenta]
swissprot
ID Q9SE45
description Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=2
trembl
ID A0A0C5A1R4
description Ann8 protein OS=Manihot esculenta GN=Ann8 PE=2 SV=1
Gene Ontology
ID GO:0005773
description annexin d3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62394: 78473-81157 , PASA_asmbl_62395: 78569-81344
cDNA
(Sanger)
(ID:Location)		 013_C18.ab1: 79449-81121 , 042_N15.ab1: 79286-81157 , 049_G21.ab1: 80012-81157

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_140 0.0 - - annexin [Manihot esculenta]
2 Hb_023988_020 0.0749140754 - - PREDICTED: transmembrane protein 19 [Prunus mume]
3 Hb_000376_110 0.0954063603 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
4 Hb_004032_440 0.118437187 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
5 Hb_001696_030 0.1254716779 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000762_020 0.1364864304 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
7 Hb_019516_040 0.1370822261 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
8 Hb_000707_080 0.1396915917 - - hypothetical protein AALP_AA4G156500, partial [Arabis alpina]
9 Hb_001017_090 0.1441388671 - - -
10 Hb_019654_070 0.1442732481 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
11 Hb_000641_030 0.1472972308 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
12 Hb_000373_290 0.1486696252 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
13 Hb_001140_160 0.149255885 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_004738_090 0.1496530309 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000184_040 0.1499643235 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
16 Hb_000085_340 0.1514612263 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
17 Hb_000997_260 0.15242496 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
18 Hb_000376_150 0.1539020032 - - O-acyltransferase WSD1 [Gossypium arboreum]
19 Hb_000028_050 0.154305935 - - aldose-1-epimerase, putative [Ricinus communis]
20 Hb_001205_090 0.1586519964 - - PREDICTED: random slug protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_140 Hb_000920_140 Hb_023988_020 Hb_023988_020 Hb_000920_140--Hb_023988_020 Hb_000376_110 Hb_000376_110 Hb_000920_140--Hb_000376_110 Hb_004032_440 Hb_004032_440 Hb_000920_140--Hb_004032_440 Hb_001696_030 Hb_001696_030 Hb_000920_140--Hb_001696_030 Hb_000762_020 Hb_000762_020 Hb_000920_140--Hb_000762_020 Hb_019516_040 Hb_019516_040 Hb_000920_140--Hb_019516_040 Hb_023988_020--Hb_001696_030 Hb_023988_020--Hb_004032_440 Hb_000184_040 Hb_000184_040 Hb_023988_020--Hb_000184_040 Hb_023988_020--Hb_000376_110 Hb_005271_170 Hb_005271_170 Hb_023988_020--Hb_005271_170 Hb_000376_110--Hb_004032_440 Hb_000376_110--Hb_001696_030 Hb_000641_030 Hb_000641_030 Hb_000376_110--Hb_000641_030 Hb_007810_040 Hb_007810_040 Hb_000376_110--Hb_007810_040 Hb_017434_090 Hb_017434_090 Hb_004032_440--Hb_017434_090 Hb_004032_440--Hb_000184_040 Hb_004032_440--Hb_000762_020 Hb_005167_040 Hb_005167_040 Hb_001696_030--Hb_005167_040 Hb_007766_010 Hb_007766_010 Hb_001696_030--Hb_007766_010 Hb_001205_090 Hb_001205_090 Hb_001696_030--Hb_001205_090 Hb_004659_120 Hb_004659_120 Hb_001696_030--Hb_004659_120 Hb_000957_040 Hb_000957_040 Hb_000762_020--Hb_000957_040 Hb_001140_160 Hb_001140_160 Hb_000762_020--Hb_001140_160 Hb_000762_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_012347_010 Hb_012347_010 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_000997_260 Hb_000997_260 Hb_019516_040--Hb_000997_260 Hb_000510_100 Hb_000510_100 Hb_019516_040--Hb_000510_100 Hb_019516_040--Hb_000762_020 Hb_003745_010 Hb_003745_010 Hb_019516_040--Hb_003745_010 Hb_019516_040--Hb_001140_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
482.116 13.2502 6.72825 91.2844 238.83 307.423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
392.967 85.5045 147.163 21.0761 4.87456

CAGE analysis