Hb_004032_440

Information

Type rubber biosynthesis
Description Gene Name: Hydroxymethylglutaryl coenzyme A reductase
Location Contig4032: 391976-394797
Sequence    

Annotation

kegg
ID rcu:RCOM_1602200
description hmg-CoA reductase, putative (EC:1.1.1.34)
nr
ID P29057.1
description RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
swissprot
ID P29057
description 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Hevea brasiliensis GN=HMGR1 PE=2 SV=1
trembl
ID Q547W6
description 3-hydroxy-3-methylglutaryl coenzyme A reductase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016021
description 3-hydroxy-3-methylglutaryl-coenzyme a reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40067: 391768-394651 , PASA_asmbl_40068: 376998-394651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_440 0.0 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
2 Hb_017434_090 0.0990466542 - - conserved hypothetical protein [Ricinus communis]
3 Hb_023988_020 0.1018925394 - - PREDICTED: transmembrane protein 19 [Prunus mume]
4 Hb_000184_040 0.1113812734 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
5 Hb_000376_110 0.1123940334 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
6 Hb_000920_140 0.118437187 - - annexin [Manihot esculenta]
7 Hb_000762_020 0.1227865878 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
8 Hb_001696_030 0.1256223682 - - cytochrome P450, putative [Ricinus communis]
9 Hb_010174_130 0.1270853447 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
10 Hb_004659_120 0.1288858514 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
11 Hb_000481_020 0.1328153259 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
12 Hb_001017_090 0.1351442032 - - -
13 Hb_002759_250 0.1356384473 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
14 Hb_005754_020 0.1372290388 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
15 Hb_000258_430 0.1372949686 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_000359_170 0.1389284708 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
17 Hb_001205_090 0.1410580423 - - PREDICTED: random slug protein 5 [Jatropha curcas]
18 Hb_003050_040 0.1436850304 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
19 Hb_022137_060 0.1436977795 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
20 Hb_094437_070 0.1447951391 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_440 Hb_004032_440 Hb_017434_090 Hb_017434_090 Hb_004032_440--Hb_017434_090 Hb_023988_020 Hb_023988_020 Hb_004032_440--Hb_023988_020 Hb_000184_040 Hb_000184_040 Hb_004032_440--Hb_000184_040 Hb_000376_110 Hb_000376_110 Hb_004032_440--Hb_000376_110 Hb_000920_140 Hb_000920_140 Hb_004032_440--Hb_000920_140 Hb_000762_020 Hb_000762_020 Hb_004032_440--Hb_000762_020 Hb_000282_060 Hb_000282_060 Hb_017434_090--Hb_000282_060 Hb_002660_140 Hb_002660_140 Hb_017434_090--Hb_002660_140 Hb_003428_110 Hb_003428_110 Hb_017434_090--Hb_003428_110 Hb_000732_260 Hb_000732_260 Hb_017434_090--Hb_000732_260 Hb_005754_020 Hb_005754_020 Hb_017434_090--Hb_005754_020 Hb_023988_020--Hb_000920_140 Hb_001696_030 Hb_001696_030 Hb_023988_020--Hb_001696_030 Hb_023988_020--Hb_000184_040 Hb_023988_020--Hb_000376_110 Hb_005271_170 Hb_005271_170 Hb_023988_020--Hb_005271_170 Hb_001047_010 Hb_001047_010 Hb_000184_040--Hb_001047_010 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_000376_110--Hb_000920_140 Hb_000376_110--Hb_001696_030 Hb_000641_030 Hb_000641_030 Hb_000376_110--Hb_000641_030 Hb_007810_040 Hb_007810_040 Hb_000376_110--Hb_007810_040 Hb_000920_140--Hb_001696_030 Hb_000920_140--Hb_000762_020 Hb_019516_040 Hb_019516_040 Hb_000920_140--Hb_019516_040 Hb_000957_040 Hb_000957_040 Hb_000762_020--Hb_000957_040 Hb_001140_160 Hb_001140_160 Hb_000762_020--Hb_001140_160 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_012347_010 Hb_012347_010 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
634.142 49.286 38.1606 166.136 402.563 354.475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
618.371 141.553 326.606 82.2452 25.2836

CAGE analysis