Hb_048141_010

Information

Type -
Description -
Location Contig48141: 4293-12712
Sequence    

Annotation

kegg
ID rcu:RCOM_0158700
description strictosidine synthase, putative (EC:4.3.3.2)
nr
ID XP_012072685.1
description PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
swissprot
ID Q9SLG8
description Protein STRICTOSIDINE SYNTHASE-LIKE 2 OS=Arabidopsis thaliana GN=SSL2 PE=2 SV=1
trembl
ID B9T2X8
description Strictosidine synthase, putative OS=Ricinus communis GN=RCOM_0158700 PE=4 SV=1
Gene Ontology
ID GO:0016844
description strictosidine synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44754: 6644-7232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048141_010 0.0 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
2 Hb_008847_010 0.0776464553 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_003540_230 0.1039855901 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
4 Hb_010578_090 0.1053563702 - - HEV2.1 [Hevea brasiliensis]
5 Hb_004787_090 0.1063963407 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
6 Hb_005016_130 0.1116246002 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
7 Hb_001631_080 0.1123954459 - - PREDICTED: importin-5-like [Populus euphratica]
8 Hb_000206_220 0.1136860517 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
9 Hb_001999_120 0.11579902 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
10 Hb_008408_030 0.1265557184 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_004659_120 0.1306707814 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
12 Hb_115919_020 0.1308037859 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_000787_070 0.1309863341 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
14 Hb_000184_180 0.1342920556 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
15 Hb_000284_010 0.1351352455 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_003038_180 0.1354011168 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
17 Hb_000184_040 0.1378832964 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
18 Hb_023226_090 0.1399385131 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
19 Hb_024505_040 0.1421227087 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
20 Hb_006831_010 0.1424105286 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_048141_010 Hb_048141_010 Hb_008847_010 Hb_008847_010 Hb_048141_010--Hb_008847_010 Hb_003540_230 Hb_003540_230 Hb_048141_010--Hb_003540_230 Hb_010578_090 Hb_010578_090 Hb_048141_010--Hb_010578_090 Hb_004787_090 Hb_004787_090 Hb_048141_010--Hb_004787_090 Hb_005016_130 Hb_005016_130 Hb_048141_010--Hb_005016_130 Hb_001631_080 Hb_001631_080 Hb_048141_010--Hb_001631_080 Hb_008847_010--Hb_005016_130 Hb_008408_030 Hb_008408_030 Hb_008847_010--Hb_008408_030 Hb_008847_010--Hb_010578_090 Hb_000787_070 Hb_000787_070 Hb_008847_010--Hb_000787_070 Hb_008847_010--Hb_003540_230 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_003540_230--Hb_000580_170 Hb_003540_230--Hb_005016_130 Hb_012799_060 Hb_012799_060 Hb_003540_230--Hb_012799_060 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180 Hb_029879_080 Hb_029879_080 Hb_010578_090--Hb_029879_080 Hb_010578_090--Hb_005016_130 Hb_002298_040 Hb_002298_040 Hb_010578_090--Hb_002298_040 Hb_115919_020 Hb_115919_020 Hb_010578_090--Hb_115919_020 Hb_000284_010 Hb_000284_010 Hb_010578_090--Hb_000284_010 Hb_004659_120 Hb_004659_120 Hb_004787_090--Hb_004659_120 Hb_006501_110 Hb_006501_110 Hb_004787_090--Hb_006501_110 Hb_004787_090--Hb_008847_010 Hb_023226_090 Hb_023226_090 Hb_004787_090--Hb_023226_090 Hb_005271_170 Hb_005271_170 Hb_004787_090--Hb_005271_170 Hb_005016_130--Hb_115919_020 Hb_005016_130--Hb_000787_070 Hb_000078_030 Hb_000078_030 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_005016_130--Hb_000284_010 Hb_001631_080--Hb_003540_230 Hb_005450_010 Hb_005450_010 Hb_001631_080--Hb_005450_010 Hb_001631_080--Hb_010578_090 Hb_124315_040 Hb_124315_040 Hb_001631_080--Hb_124315_040 Hb_001631_070 Hb_001631_070 Hb_001631_080--Hb_001631_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.1668 1.57917 0.643656 12.1143 31.9477 55.8125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.97 50.6698 38.5066 9.86578 1.05444

CAGE analysis