Hb_005450_010

Information

Type -
Description -
Location Contig5450: 7765-11380
Sequence    

Annotation

kegg
ID tcc:TCM_043069
description RNA-binding family protein isoform 1
nr
ID XP_012073739.1
description PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID A0A067LNV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06665 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna-binding protein 24-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47964: 8067-11584 , PASA_asmbl_47965: 8067-11139 , PASA_asmbl_47966: 8067-8849
cDNA
(Sanger)
(ID:Location)		 004_B11.ab1: 8410-11262 , 047_L16.ab1: 8410-11210

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005450_010 0.0 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
2 Hb_001892_150 0.1129851797 - - -
3 Hb_001631_080 0.1340853038 - - PREDICTED: importin-5-like [Populus euphratica]
4 Hb_000284_010 0.1374043649 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
5 Hb_043061_010 0.1442371378 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
6 Hb_029879_080 0.1464838024 - - unknown [Populus trichocarpa]
7 Hb_001741_080 0.147917106 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
8 Hb_010578_090 0.1513447279 - - HEV2.1 [Hevea brasiliensis]
9 Hb_001631_070 0.1547077704 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_000444_030 0.155592816 - - PREDICTED: expansin-A20 [Jatropha curcas]
11 Hb_115919_020 0.1567044494 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
12 Hb_005016_130 0.1581539238 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
13 Hb_060668_010 0.1611224764 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
14 Hb_000184_180 0.1612856258 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
15 Hb_048141_010 0.1618550962 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
16 Hb_008847_010 0.1624055608 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
17 Hb_000078_030 0.1626874787 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010872_060 0.1651490493 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
19 Hb_000788_120 0.1658623312 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
20 Hb_003540_230 0.1670068923 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005450_010 Hb_005450_010 Hb_001892_150 Hb_001892_150 Hb_005450_010--Hb_001892_150 Hb_001631_080 Hb_001631_080 Hb_005450_010--Hb_001631_080 Hb_000284_010 Hb_000284_010 Hb_005450_010--Hb_000284_010 Hb_043061_010 Hb_043061_010 Hb_005450_010--Hb_043061_010 Hb_029879_080 Hb_029879_080 Hb_005450_010--Hb_029879_080 Hb_001741_080 Hb_001741_080 Hb_005450_010--Hb_001741_080 Hb_001892_150--Hb_043061_010 Hb_001892_150--Hb_029879_080 Hb_003327_060 Hb_003327_060 Hb_001892_150--Hb_003327_060 Hb_115919_020 Hb_115919_020 Hb_001892_150--Hb_115919_020 Hb_134789_010 Hb_134789_010 Hb_001892_150--Hb_134789_010 Hb_048141_010 Hb_048141_010 Hb_001631_080--Hb_048141_010 Hb_003540_230 Hb_003540_230 Hb_001631_080--Hb_003540_230 Hb_010578_090 Hb_010578_090 Hb_001631_080--Hb_010578_090 Hb_124315_040 Hb_124315_040 Hb_001631_080--Hb_124315_040 Hb_001631_070 Hb_001631_070 Hb_001631_080--Hb_001631_070 Hb_000284_010--Hb_115919_020 Hb_000078_030 Hb_000078_030 Hb_000284_010--Hb_000078_030 Hb_005016_130 Hb_005016_130 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_002298_040 Hb_002298_040 Hb_000284_010--Hb_002298_040 Hb_000193_230 Hb_000193_230 Hb_000284_010--Hb_000193_230 Hb_043061_010--Hb_115919_020 Hb_043061_010--Hb_000284_010 Hb_000444_030 Hb_000444_030 Hb_043061_010--Hb_000444_030 Hb_043061_010--Hb_134789_010 Hb_000184_180 Hb_000184_180 Hb_043061_010--Hb_000184_180 Hb_029879_080--Hb_010578_090 Hb_029879_080--Hb_002298_040 Hb_029879_080--Hb_005016_130 Hb_029879_080--Hb_115919_020 Hb_029879_080--Hb_000284_010 Hb_029879_080--Hb_002221_080 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_001741_080--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_001741_080--Hb_000041_070 Hb_001741_080--Hb_000078_030 Hb_001741_080--Hb_000444_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
329.042 3.37442 1.70706 3.87206 72.0177 353.386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
512.216 218.354 153.069 19.6715 0.933124

CAGE analysis