Hb_003327_060

Information

Type -
Description -
Location Contig3327: 47721-58452
Sequence    

Annotation

kegg
ID rcu:RCOM_0569520
description protein binding protein, putative
nr
ID XP_012086259.1
description PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
swissprot
ID Q6P4K6
description Serine/threonine-protein kinase 11-interacting protein OS=Xenopus tropicalis GN=stk11ip PE=2 SV=1
trembl
ID B9SXS1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0569520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34904: 48112-52773 , PASA_asmbl_34905: 50433-50676 , PASA_asmbl_34906: 52802-57279 , PASA_asmbl_34907: 57158-58389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003327_060 0.0 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
2 Hb_000914_060 0.0888290413 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
3 Hb_138413_010 0.0905085607 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
4 Hb_000155_070 0.1010422077 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
5 Hb_000933_140 0.1067249649 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
6 Hb_004968_060 0.1140513464 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005730_020 0.1205163522 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
8 Hb_003627_020 0.1222693885 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
9 Hb_002301_020 0.1254146445 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
10 Hb_014067_010 0.1326691891 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
11 Hb_116349_150 0.1333271824 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
12 Hb_001892_150 0.1351622938 - - -
13 Hb_007317_220 0.1362205855 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
14 Hb_003786_110 0.1364089929 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
15 Hb_000563_540 0.1374745065 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
16 Hb_026048_090 0.1377348112 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000571_070 0.1398803537 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
18 Hb_005488_100 0.1401790468 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
19 Hb_134789_010 0.1409031246 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
20 Hb_000193_230 0.1436172153 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003327_060 Hb_003327_060 Hb_000914_060 Hb_000914_060 Hb_003327_060--Hb_000914_060 Hb_138413_010 Hb_138413_010 Hb_003327_060--Hb_138413_010 Hb_000155_070 Hb_000155_070 Hb_003327_060--Hb_000155_070 Hb_000933_140 Hb_000933_140 Hb_003327_060--Hb_000933_140 Hb_004968_060 Hb_004968_060 Hb_003327_060--Hb_004968_060 Hb_005730_020 Hb_005730_020 Hb_003327_060--Hb_005730_020 Hb_000914_060--Hb_000155_070 Hb_000603_200 Hb_000603_200 Hb_000914_060--Hb_000603_200 Hb_003627_020 Hb_003627_020 Hb_000914_060--Hb_003627_020 Hb_000061_410 Hb_000061_410 Hb_000914_060--Hb_000061_410 Hb_001892_150 Hb_001892_150 Hb_000914_060--Hb_001892_150 Hb_014067_010 Hb_014067_010 Hb_138413_010--Hb_014067_010 Hb_138413_010--Hb_000933_140 Hb_026048_090 Hb_026048_090 Hb_138413_010--Hb_026048_090 Hb_138413_010--Hb_003627_020 Hb_002067_160 Hb_002067_160 Hb_138413_010--Hb_002067_160 Hb_002301_020 Hb_002301_020 Hb_000155_070--Hb_002301_020 Hb_000155_070--Hb_003627_020 Hb_000907_100 Hb_000907_100 Hb_000155_070--Hb_000907_100 Hb_004126_010 Hb_004126_010 Hb_000155_070--Hb_004126_010 Hb_008016_010 Hb_008016_010 Hb_000933_140--Hb_008016_010 Hb_000933_140--Hb_026048_090 Hb_001437_040 Hb_001437_040 Hb_000933_140--Hb_001437_040 Hb_007992_030 Hb_007992_030 Hb_000933_140--Hb_007992_030 Hb_002518_250 Hb_002518_250 Hb_000933_140--Hb_002518_250 Hb_098709_010 Hb_098709_010 Hb_000933_140--Hb_098709_010 Hb_004968_060--Hb_138413_010 Hb_004223_200 Hb_004223_200 Hb_004968_060--Hb_004223_200 Hb_004968_060--Hb_000914_060 Hb_000563_530 Hb_000563_530 Hb_004968_060--Hb_000563_530 Hb_002200_120 Hb_002200_120 Hb_004968_060--Hb_002200_120 Hb_002609_260 Hb_002609_260 Hb_005730_020--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_005730_020--Hb_000264_190 Hb_009510_030 Hb_009510_030 Hb_005730_020--Hb_009510_030 Hb_003001_030 Hb_003001_030 Hb_005730_020--Hb_003001_030 Hb_010931_100 Hb_010931_100 Hb_005730_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_005730_020--Hb_000563_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.017 4.16533 2.36344 5.59885 126.269 257.067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.308 153.461 97.7225 9.42709 3.01388

CAGE analysis