Hb_003627_020

Information

Type -
Description -
Location Contig3627: 44954-46825
Sequence    

Annotation

kegg
ID tcc:TCM_024538
description Calcium-binding EF-hand family protein isoform 1
nr
ID XP_012086224.1
description PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
swissprot
ID Q8W4L0
description Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1
trembl
ID A0A067JQC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21125 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml49

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37257: 44893-46958
cDNA
(Sanger)
(ID:Location)		 040_G08.ab1: 44893-46290 , 047_E18.ab1: 44893-46763

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003627_020 0.0 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
2 Hb_004126_010 0.0932399108 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
3 Hb_003507_020 0.0953422554 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
4 Hb_003656_030 0.0985838826 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
5 Hb_007178_010 0.1004003446 - - pseudo-hevein [Hevea brasiliensis]
6 Hb_005488_070 0.100760872 - - putative cytochrome P450 [Oryza sativa Japonica Group]
7 Hb_009510_030 0.1025192755 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
8 Hb_000155_070 0.1037943692 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
9 Hb_013479_020 0.1052650922 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_014067_010 0.1072648544 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
11 Hb_000853_370 0.1074479895 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
12 Hb_017134_040 0.1098837588 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
13 Hb_026048_090 0.1122700004 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001252_160 0.112341803 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
15 Hb_005730_020 0.1154082988 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
16 Hb_003786_110 0.1192134856 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
17 Hb_138413_010 0.1207862829 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
18 Hb_002942_030 0.1207955926 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
19 Hb_019654_070 0.1207956248 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
20 Hb_003327_060 0.1222693885 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003627_020 Hb_003627_020 Hb_004126_010 Hb_004126_010 Hb_003627_020--Hb_004126_010 Hb_003507_020 Hb_003507_020 Hb_003627_020--Hb_003507_020 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_007178_010 Hb_007178_010 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_009510_030 Hb_009510_030 Hb_003627_020--Hb_009510_030 Hb_004126_010--Hb_009510_030 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_026048_090 Hb_026048_090 Hb_004126_010--Hb_026048_090 Hb_000057_060 Hb_000057_060 Hb_004126_010--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_004126_010--Hb_003001_030 Hb_002506_010 Hb_002506_010 Hb_004126_010--Hb_002506_010 Hb_043637_010 Hb_043637_010 Hb_003507_020--Hb_043637_010 Hb_000603_200 Hb_000603_200 Hb_003507_020--Hb_000603_200 Hb_001252_160 Hb_001252_160 Hb_003507_020--Hb_001252_160 Hb_000853_370 Hb_000853_370 Hb_003507_020--Hb_000853_370 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040 Hb_003656_030--Hb_005488_070 Hb_003656_030--Hb_007178_010 Hb_000208_240 Hb_000208_240 Hb_003656_030--Hb_000208_240 Hb_019654_070 Hb_019654_070 Hb_003656_030--Hb_019654_070 Hb_003656_030--Hb_004126_010 Hb_002232_180 Hb_002232_180 Hb_007178_010--Hb_002232_180 Hb_007178_010--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_007178_010--Hb_002067_160 Hb_005488_100 Hb_005488_100 Hb_007178_010--Hb_005488_100 Hb_003906_110 Hb_003906_110 Hb_007178_010--Hb_003906_110 Hb_010931_100 Hb_010931_100 Hb_007178_010--Hb_010931_100 Hb_005488_070--Hb_000208_240 Hb_019613_020 Hb_019613_020 Hb_005488_070--Hb_019613_020 Hb_005488_070--Hb_009510_030 Hb_035524_030 Hb_035524_030 Hb_005488_070--Hb_035524_030 Hb_009510_030--Hb_002506_010 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_009510_030--Hb_000057_060 Hb_009510_030--Hb_003001_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
289.761 19.2362 1.44546 32.2564 352.284 455.261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
200.184 188.631 171.615 23.1888 4.3668

CAGE analysis