Hb_000208_240

Information

Type -
Description -
Location Contig208: 318699-323527
Sequence    

Annotation

kegg
ID rcu:RCOM_0994070
description triacylglycerol lipase, putative
nr
ID XP_012068775.1
description PREDICTED: uncharacterized protein LOC105631307 [Jatropha curcas]
swissprot
ID O59952
description Lipase OS=Thermomyces lanuginosus GN=LIP PE=1 SV=1
trembl
ID Q5S8F1
description Lipase OS=Ricinus communis GN=OBL2 PE=2 SV=1
Gene Ontology
ID GO:0016787
description lipase class 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21501: 318559-323577 , PASA_asmbl_21502: 321095-323570
cDNA
(Sanger)
(ID:Location)		 003_F10.ab1: 321192-323570 , 033_B19.ab1: 321287-323570

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_240 0.0 - - PREDICTED: uncharacterized protein LOC105631307 [Jatropha curcas]
2 Hb_005488_070 0.0802563525 - - putative cytochrome P450 [Oryza sativa Japonica Group]
3 Hb_000988_050 0.0835760354 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003656_030 0.0954686526 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
5 Hb_176022_020 0.103856104 - - cytochrome P450, putative [Ricinus communis]
6 Hb_002506_010 0.1102718628 - - choline transporter-related family protein [Populus trichocarpa]
7 Hb_003404_030 0.1107571857 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_000230_110 0.1120777579 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
9 Hb_019613_020 0.1233080157 - - phospholipase C, putative [Ricinus communis]
10 Hb_009510_030 0.1259797562 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
11 Hb_004156_060 0.1290845267 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
12 Hb_004126_010 0.1300253069 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
13 Hb_002200_110 0.1318281869 - - conserved hypothetical protein [Ricinus communis]
14 Hb_154381_050 0.1322674314 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001102_110 0.1336733192 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
16 Hb_003627_020 0.1345513354 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
17 Hb_012055_020 0.13661801 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
18 Hb_000088_040 0.1394724916 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
19 Hb_007178_010 0.1398405208 - - pseudo-hevein [Hevea brasiliensis]
20 Hb_011021_030 0.1407721566 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]

Gene co-expression network

sample Hb_000208_240 Hb_000208_240 Hb_005488_070 Hb_005488_070 Hb_000208_240--Hb_005488_070 Hb_000988_050 Hb_000988_050 Hb_000208_240--Hb_000988_050 Hb_003656_030 Hb_003656_030 Hb_000208_240--Hb_003656_030 Hb_176022_020 Hb_176022_020 Hb_000208_240--Hb_176022_020 Hb_002506_010 Hb_002506_010 Hb_000208_240--Hb_002506_010 Hb_003404_030 Hb_003404_030 Hb_000208_240--Hb_003404_030 Hb_005488_070--Hb_003656_030 Hb_019613_020 Hb_019613_020 Hb_005488_070--Hb_019613_020 Hb_009510_030 Hb_009510_030 Hb_005488_070--Hb_009510_030 Hb_035524_030 Hb_035524_030 Hb_005488_070--Hb_035524_030 Hb_003627_020 Hb_003627_020 Hb_005488_070--Hb_003627_020 Hb_000988_050--Hb_005488_070 Hb_000988_050--Hb_003656_030 Hb_011021_030 Hb_011021_030 Hb_000988_050--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000988_050--Hb_154381_050 Hb_007111_040 Hb_007111_040 Hb_000988_050--Hb_007111_040 Hb_007178_010 Hb_007178_010 Hb_003656_030--Hb_007178_010 Hb_019654_070 Hb_019654_070 Hb_003656_030--Hb_019654_070 Hb_003656_030--Hb_003627_020 Hb_004126_010 Hb_004126_010 Hb_003656_030--Hb_004126_010 Hb_176022_020--Hb_003404_030 Hb_176022_020--Hb_019613_020 Hb_012055_020 Hb_012055_020 Hb_176022_020--Hb_012055_020 Hb_000088_040 Hb_000088_040 Hb_176022_020--Hb_000088_040 Hb_040996_010 Hb_040996_010 Hb_176022_020--Hb_040996_010 Hb_000005_050 Hb_000005_050 Hb_176022_020--Hb_000005_050 Hb_002506_010--Hb_009510_030 Hb_002506_010--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_002506_010--Hb_000057_060 Hb_001017_090 Hb_001017_090 Hb_002506_010--Hb_001017_090 Hb_010174_130 Hb_010174_130 Hb_002506_010--Hb_010174_130 Hb_000387_080 Hb_000387_080 Hb_002506_010--Hb_000387_080 Hb_003404_030--Hb_000057_060 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_003404_030--Hb_009510_030 Hb_003404_030--Hb_010174_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
854.287 55.3342 20.0361 317.171 1425.06 1351.45
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
720.339 385.613 880.994 147.073 27.2667

CAGE analysis