Hb_000853_370

Information

Type -
Description -
Location Contig853: 272390-272692
Sequence    

Annotation

kegg
ID rcu:RCOM_1348000
description hypothetical protein
nr
ID XP_012082854.1
description PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13997 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_370 0.0 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
2 Hb_003507_020 0.098850244 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
3 Hb_003627_020 0.1074479895 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
4 Hb_014067_010 0.1087383994 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
5 Hb_050964_020 0.1115479973 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
6 Hb_007178_010 0.1125490599 - - pseudo-hevein [Hevea brasiliensis]
7 Hb_154381_050 0.1135463878 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000329_610 0.1142492039 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003786_110 0.1208411406 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
10 Hb_002232_180 0.121612507 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
11 Hb_001115_050 0.1233499798 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_026048_090 0.1266027732 - - conserved hypothetical protein [Ricinus communis]
13 Hb_138413_010 0.1271242108 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
14 Hb_000483_370 0.1292312774 - - conserved hypothetical protein [Ricinus communis]
15 Hb_075812_010 0.1296898132 - - hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
16 Hb_002200_110 0.1302312623 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002172_030 0.1310673159 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
18 Hb_012654_020 0.131457528 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002078_040 0.1315174534 - - protein with unknown function [Ricinus communis]
20 Hb_000117_040 0.1317437747 - - 30S ribosomal protein S6A [Hevea brasiliensis]

Gene co-expression network

sample Hb_000853_370 Hb_000853_370 Hb_003507_020 Hb_003507_020 Hb_000853_370--Hb_003507_020 Hb_003627_020 Hb_003627_020 Hb_000853_370--Hb_003627_020 Hb_014067_010 Hb_014067_010 Hb_000853_370--Hb_014067_010 Hb_050964_020 Hb_050964_020 Hb_000853_370--Hb_050964_020 Hb_007178_010 Hb_007178_010 Hb_000853_370--Hb_007178_010 Hb_154381_050 Hb_154381_050 Hb_000853_370--Hb_154381_050 Hb_043637_010 Hb_043637_010 Hb_003507_020--Hb_043637_010 Hb_000603_200 Hb_000603_200 Hb_003507_020--Hb_000603_200 Hb_001252_160 Hb_001252_160 Hb_003507_020--Hb_001252_160 Hb_003507_020--Hb_003627_020 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040 Hb_004126_010 Hb_004126_010 Hb_003627_020--Hb_004126_010 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_009510_030 Hb_009510_030 Hb_003627_020--Hb_009510_030 Hb_014067_010--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_014067_010--Hb_000249_110 Hb_138413_010 Hb_138413_010 Hb_014067_010--Hb_138413_010 Hb_002843_160 Hb_002843_160 Hb_014067_010--Hb_002843_160 Hb_005730_020 Hb_005730_020 Hb_014067_010--Hb_005730_020 Hb_014067_010--Hb_009510_030 Hb_005410_010 Hb_005410_010 Hb_050964_020--Hb_005410_010 Hb_050964_020--Hb_003507_020 Hb_002405_020 Hb_002405_020 Hb_050964_020--Hb_002405_020 Hb_002149_040 Hb_002149_040 Hb_050964_020--Hb_002149_040 Hb_001628_110 Hb_001628_110 Hb_050964_020--Hb_001628_110 Hb_002232_180 Hb_002232_180 Hb_007178_010--Hb_002232_180 Hb_007178_010--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_007178_010--Hb_002067_160 Hb_005488_100 Hb_005488_100 Hb_007178_010--Hb_005488_100 Hb_003906_110 Hb_003906_110 Hb_007178_010--Hb_003906_110 Hb_010931_100 Hb_010931_100 Hb_007178_010--Hb_010931_100 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_154381_050--Hb_005410_010 Hb_002172_030 Hb_002172_030 Hb_154381_050--Hb_002172_030 Hb_006029_010 Hb_006029_010 Hb_154381_050--Hb_006029_010 Hb_012654_020 Hb_012654_020 Hb_154381_050--Hb_012654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.4928 5.30082 0.664619 5.21932 74.0111 71.7833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9992 44.8493 32.0543 8.79447 0.446463

CAGE analysis