Hb_001628_110

Information

Type -
Description -
Location Contig1628: 222107-230124
Sequence    

Annotation

kegg
ID tcc:TCM_006636
description Calcium-dependent lipid-binding family protein isoform 3
nr
ID XP_012081761.1
description PREDICTED: synaptotagmin-2 [Jatropha curcas]
swissprot
ID Q9SKR2
description Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2
trembl
ID A0A061DZA6
description Synaptotagmin A isoform 4 OS=Theobroma cacao GN=TCM_006636 PE=4 SV=1
Gene Ontology
ID GO:0005515
description synaptotagmin a isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14773: 222182-230136 , PASA_asmbl_14774: 228625-228825
cDNA
(Sanger)
(ID:Location)		 043_J20.ab1: 222182-224953 , 046_B19.ab1: 222182-224786

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001628_110 0.0 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
2 Hb_002078_040 0.1018512007 - - protein with unknown function [Ricinus communis]
3 Hb_002172_030 0.1026097977 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
4 Hb_154381_050 0.1078945445 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005410_010 0.1095125989 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
6 Hb_043637_010 0.111831831 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
7 Hb_003507_020 0.1136861085 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
8 Hb_001268_230 0.1141200984 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_012654_020 0.1143696629 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000050_120 0.1180325725 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
11 Hb_000210_130 0.11876588 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
12 Hb_003304_080 0.1196852532 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
13 Hb_010368_070 0.1206630034 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002701_130 0.1218835692 transcription factor TF Family: MYB Myb domain protein 121 [Theobroma cacao]
15 Hb_050964_020 0.1229328099 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
16 Hb_001115_050 0.1251614387 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
17 Hb_007810_040 0.1258926159 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
18 Hb_000317_080 0.1285804253 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
19 Hb_001846_080 0.1324667198 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
20 Hb_000853_370 0.1328922111 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]

Gene co-expression network

sample Hb_001628_110 Hb_001628_110 Hb_002078_040 Hb_002078_040 Hb_001628_110--Hb_002078_040 Hb_002172_030 Hb_002172_030 Hb_001628_110--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_001628_110--Hb_154381_050 Hb_005410_010 Hb_005410_010 Hb_001628_110--Hb_005410_010 Hb_043637_010 Hb_043637_010 Hb_001628_110--Hb_043637_010 Hb_003507_020 Hb_003507_020 Hb_001628_110--Hb_003507_020 Hb_000050_120 Hb_000050_120 Hb_002078_040--Hb_000050_120 Hb_003304_080 Hb_003304_080 Hb_002078_040--Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_002078_040--Hb_007810_040 Hb_012654_020 Hb_012654_020 Hb_002078_040--Hb_012654_020 Hb_002078_040--Hb_002172_030 Hb_002078_040--Hb_154381_050 Hb_002172_030--Hb_012654_020 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_002172_030--Hb_005410_010 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_002172_030--Hb_154381_050 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_154381_050--Hb_005410_010 Hb_006029_010 Hb_006029_010 Hb_154381_050--Hb_006029_010 Hb_154381_050--Hb_012654_020 Hb_005410_010--Hb_012654_020 Hb_002149_040 Hb_002149_040 Hb_005410_010--Hb_002149_040 Hb_005410_010--Hb_001846_080 Hb_000161_030 Hb_000161_030 Hb_005410_010--Hb_000161_030 Hb_170116_010 Hb_170116_010 Hb_043637_010--Hb_170116_010 Hb_043637_010--Hb_003507_020 Hb_043637_010--Hb_007810_040 Hb_000603_200 Hb_000603_200 Hb_043637_010--Hb_000603_200 Hb_043637_010--Hb_003304_080 Hb_003507_020--Hb_000603_200 Hb_001252_160 Hb_001252_160 Hb_003507_020--Hb_001252_160 Hb_003627_020 Hb_003627_020 Hb_003507_020--Hb_003627_020 Hb_000853_370 Hb_000853_370 Hb_003507_020--Hb_000853_370 Hb_003507_020--Hb_007810_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
776.094 35.655 20.4186 59.7376 1314.57 778.584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
306.245 357.536 255.763 45.5676 12.9853

CAGE analysis