Hb_170116_010

Information

Type -
Description -
Location Contig170116: 3695-6289
Sequence    

Annotation

kegg
ID tcc:TCM_029417
description Geranyl diphosphate synthase 1 isoform 1
nr
ID XP_007024980.1
description Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
swissprot
ID Q5HZ00
description Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
trembl
ID A0A061GEN9
description Geranyl diphosphate synthase 1 isoform 2 OS=Theobroma cacao GN=TCM_029417 PE=3 SV=1
Gene Ontology
ID GO:0004659
description solanesyl diphosphate synthase chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170116_010 0.0 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
2 Hb_043637_010 0.0923891056 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
3 Hb_000352_150 0.1046936729 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
4 Hb_000523_020 0.1090809649 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
5 Hb_001454_390 0.1103915527 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
6 Hb_002875_090 0.1167241724 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001635_220 0.1170518343 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
8 Hb_000270_400 0.1197492208 - - lipase, putative [Ricinus communis]
9 Hb_053262_010 0.1233222828 - - -
10 Hb_002627_060 0.1234951869 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
11 Hb_003636_090 0.1252759728 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
12 Hb_011616_030 0.1294345737 - - -
13 Hb_003304_080 0.1297600184 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
14 Hb_000038_130 0.1320381438 - - -
15 Hb_002388_060 0.1323219851 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000603_200 0.1323942238 - - PREDICTED: myosin-15 [Jatropha curcas]
17 Hb_001980_020 0.1350377658 - - -
18 Hb_000376_150 0.1364507935 - - O-acyltransferase WSD1 [Gossypium arboreum]
19 Hb_007810_040 0.1403901381 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
20 Hb_003253_010 0.1407541324 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]

Gene co-expression network

sample Hb_170116_010 Hb_170116_010 Hb_043637_010 Hb_043637_010 Hb_170116_010--Hb_043637_010 Hb_000352_150 Hb_000352_150 Hb_170116_010--Hb_000352_150 Hb_000523_020 Hb_000523_020 Hb_170116_010--Hb_000523_020 Hb_001454_390 Hb_001454_390 Hb_170116_010--Hb_001454_390 Hb_002875_090 Hb_002875_090 Hb_170116_010--Hb_002875_090 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220 Hb_003507_020 Hb_003507_020 Hb_043637_010--Hb_003507_020 Hb_007810_040 Hb_007810_040 Hb_043637_010--Hb_007810_040 Hb_000603_200 Hb_000603_200 Hb_043637_010--Hb_000603_200 Hb_003304_080 Hb_003304_080 Hb_043637_010--Hb_003304_080 Hb_001628_110 Hb_001628_110 Hb_043637_010--Hb_001628_110 Hb_000352_150--Hb_002875_090 Hb_001980_020 Hb_001980_020 Hb_000352_150--Hb_001980_020 Hb_003636_090 Hb_003636_090 Hb_000352_150--Hb_003636_090 Hb_000352_150--Hb_001454_390 Hb_003253_010 Hb_003253_010 Hb_000352_150--Hb_003253_010 Hb_000270_400 Hb_000270_400 Hb_000523_020--Hb_000270_400 Hb_126669_010 Hb_126669_010 Hb_000523_020--Hb_126669_010 Hb_007545_210 Hb_007545_210 Hb_000523_020--Hb_007545_210 Hb_002388_060 Hb_002388_060 Hb_000523_020--Hb_002388_060 Hb_002627_060 Hb_002627_060 Hb_000523_020--Hb_002627_060 Hb_001780_060 Hb_001780_060 Hb_001454_390--Hb_001780_060 Hb_000590_090 Hb_000590_090 Hb_001454_390--Hb_000590_090 Hb_001454_390--Hb_002875_090 Hb_001454_390--Hb_003253_010 Hb_000038_130 Hb_000038_130 Hb_001454_390--Hb_000038_130 Hb_002875_090--Hb_003636_090 Hb_002875_090--Hb_001780_060 Hb_002875_090--Hb_003304_080 Hb_003913_100 Hb_003913_100 Hb_001635_220--Hb_003913_100 Hb_000483_370 Hb_000483_370 Hb_001635_220--Hb_000483_370 Hb_000172_530 Hb_000172_530 Hb_001635_220--Hb_000172_530 Hb_004254_040 Hb_004254_040 Hb_001635_220--Hb_004254_040 Hb_001635_220--Hb_000603_200 Hb_001635_220--Hb_000038_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
121.008 1.91727 1.6363 1.27588 76.5663 58.3721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5949 32.1373 17.438 2.17824 0.299222

CAGE analysis