Hb_004254_040

Information

Type -
Description -
Location Contig4254: 31235-33230
Sequence    

Annotation

kegg
ID rcu:RCOM_1158800
description hypothetical protein
nr
ID XP_012093007.1
description PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J8M2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42009: 31183-33212 , PASA_asmbl_42010: 31183-33167 , PASA_asmbl_42011: 31183-33091
cDNA
(Sanger)
(ID:Location)		 036_E16.ab1: 31459-33164

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004254_040 0.0 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
2 Hb_000270_400 0.1025278898 - - lipase, putative [Ricinus communis]
3 Hb_001635_220 0.1030409099 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
4 Hb_000172_610 0.1042229103 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
5 Hb_001140_080 0.1091104437 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
6 Hb_012807_120 0.1152420367 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_000009_640 0.1210621456 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_12318 [Jatropha curcas]
8 Hb_098315_100 0.1211372702 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
9 Hb_000172_530 0.1243508362 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
10 Hb_006478_070 0.1251406344 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
11 Hb_000365_350 0.1251604148 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
12 Hb_002627_060 0.125821065 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
13 Hb_003913_100 0.1291776319 - - copper amine oxidase, putative [Ricinus communis]
14 Hb_002078_430 0.1291868164 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
15 Hb_000483_370 0.1298626567 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003050_090 0.1304095589 - - lupus la ribonucleoprotein, putative [Ricinus communis]
17 Hb_000856_100 0.1317070533 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
18 Hb_000613_020 0.1331285425 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
19 Hb_000376_150 0.1333693082 - - O-acyltransferase WSD1 [Gossypium arboreum]
20 Hb_001259_030 0.1349829646 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]

Gene co-expression network

sample Hb_004254_040 Hb_004254_040 Hb_000270_400 Hb_000270_400 Hb_004254_040--Hb_000270_400 Hb_001635_220 Hb_001635_220 Hb_004254_040--Hb_001635_220 Hb_000172_610 Hb_000172_610 Hb_004254_040--Hb_000172_610 Hb_001140_080 Hb_001140_080 Hb_004254_040--Hb_001140_080 Hb_012807_120 Hb_012807_120 Hb_004254_040--Hb_012807_120 Hb_000009_640 Hb_000009_640 Hb_004254_040--Hb_000009_640 Hb_000523_020 Hb_000523_020 Hb_000270_400--Hb_000523_020 Hb_007545_210 Hb_007545_210 Hb_000270_400--Hb_007545_210 Hb_126669_010 Hb_126669_010 Hb_000270_400--Hb_126669_010 Hb_000270_400--Hb_000172_610 Hb_002627_060 Hb_002627_060 Hb_000270_400--Hb_002627_060 Hb_003913_100 Hb_003913_100 Hb_001635_220--Hb_003913_100 Hb_000483_370 Hb_000483_370 Hb_001635_220--Hb_000483_370 Hb_000172_530 Hb_000172_530 Hb_001635_220--Hb_000172_530 Hb_000603_200 Hb_000603_200 Hb_001635_220--Hb_000603_200 Hb_000038_130 Hb_000038_130 Hb_001635_220--Hb_000038_130 Hb_000172_610--Hb_002627_060 Hb_000155_080 Hb_000155_080 Hb_000172_610--Hb_000155_080 Hb_098315_100 Hb_098315_100 Hb_000172_610--Hb_098315_100 Hb_000172_610--Hb_126669_010 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_001140_080--Hb_012807_120 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_006478_070 Hb_006478_070 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_012807_120--Hb_006478_070 Hb_000365_350 Hb_000365_350 Hb_012807_120--Hb_000365_350 Hb_000320_440 Hb_000320_440 Hb_012807_120--Hb_000320_440 Hb_000088_180 Hb_000088_180 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_004232_010 Hb_004232_010 Hb_000009_640--Hb_004232_010 Hb_000009_640--Hb_000172_610 Hb_001259_030 Hb_001259_030 Hb_000009_640--Hb_001259_030 Hb_002078_430 Hb_002078_430 Hb_000009_640--Hb_002078_430 Hb_000009_640--Hb_001140_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5390.72 492.629 74.1483 65.8941 2887.95 3767.97
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2161.55 737.316 629.242 374.883 32.1283

CAGE analysis