Hb_003913_100

Information

Type -
Description -
Location Contig3913: 80934-90437
Sequence    

Annotation

kegg
ID rcu:RCOM_1509320
description copper amine oxidase, putative
nr
ID XP_002511334.1
description copper amine oxidase, putative [Ricinus communis]
swissprot
ID Q07123
description Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1
trembl
ID B9RAV9
description Copper amine oxidase, putative OS=Ricinus communis GN=RCOM_1509320 PE=3 SV=1
Gene Ontology
ID GO:0005777
description copper amine oxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39206: 86206-90384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_100 0.0 - - copper amine oxidase, putative [Ricinus communis]
2 Hb_002835_190 0.0923280783 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
3 Hb_001635_220 0.0939394086 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
4 Hb_000320_440 0.1059126584 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
5 Hb_001776_080 0.1135596619 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
6 Hb_012654_020 0.1178330808 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000172_530 0.1199109612 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
8 Hb_050964_020 0.1230291244 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
9 Hb_000329_620 0.1262973394 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
10 Hb_000483_370 0.126737758 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001846_080 0.1268891256 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
12 Hb_000050_120 0.1271187603 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
13 Hb_000179_250 0.1277421037 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
14 Hb_012807_120 0.1280058874 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_000603_200 0.1280314465 - - PREDICTED: myosin-15 [Jatropha curcas]
16 Hb_000260_700 0.1286649933 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
17 Hb_004254_040 0.1291776319 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
18 Hb_098315_100 0.1303683327 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
19 Hb_003777_220 0.1316971338 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
20 Hb_000176_140 0.1320206075 - - PREDICTED: bystin [Jatropha curcas]

Gene co-expression network

sample Hb_003913_100 Hb_003913_100 Hb_002835_190 Hb_002835_190 Hb_003913_100--Hb_002835_190 Hb_001635_220 Hb_001635_220 Hb_003913_100--Hb_001635_220 Hb_000320_440 Hb_000320_440 Hb_003913_100--Hb_000320_440 Hb_001776_080 Hb_001776_080 Hb_003913_100--Hb_001776_080 Hb_012654_020 Hb_012654_020 Hb_003913_100--Hb_012654_020 Hb_000172_530 Hb_000172_530 Hb_003913_100--Hb_000172_530 Hb_001252_160 Hb_001252_160 Hb_002835_190--Hb_001252_160 Hb_000329_620 Hb_000329_620 Hb_002835_190--Hb_000329_620 Hb_005496_060 Hb_005496_060 Hb_002835_190--Hb_005496_060 Hb_002942_030 Hb_002942_030 Hb_002835_190--Hb_002942_030 Hb_013479_020 Hb_013479_020 Hb_002835_190--Hb_013479_020 Hb_000483_370 Hb_000483_370 Hb_001635_220--Hb_000483_370 Hb_001635_220--Hb_000172_530 Hb_004254_040 Hb_004254_040 Hb_001635_220--Hb_004254_040 Hb_000603_200 Hb_000603_200 Hb_001635_220--Hb_000603_200 Hb_000038_130 Hb_000038_130 Hb_001635_220--Hb_000038_130 Hb_000320_440--Hb_001776_080 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_002172_030 Hb_002172_030 Hb_012654_020--Hb_002172_030 Hb_005410_010 Hb_005410_010 Hb_012654_020--Hb_005410_010 Hb_011609_190 Hb_011609_190 Hb_012654_020--Hb_011609_190 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_012654_020--Hb_001776_080 Hb_000050_120 Hb_000050_120 Hb_012654_020--Hb_000050_120 Hb_001523_010 Hb_001523_010 Hb_000172_530--Hb_001523_010 Hb_001846_080 Hb_001846_080 Hb_000172_530--Hb_001846_080 Hb_006478_070 Hb_006478_070 Hb_000172_530--Hb_006478_070 Hb_000466_060 Hb_000466_060 Hb_000172_530--Hb_000466_060 Hb_005016_030 Hb_005016_030 Hb_000172_530--Hb_005016_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
202.935 32.4148 1.29715 6.70775 221.046 193.411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
151.045 59.4169 45.8326 12.065 2.8058

CAGE analysis