Hb_000483_370

Information

Type -
Description -
Location Contig483: 331321-333940
Sequence    

Annotation

kegg
ID rcu:RCOM_0193190
description hypothetical protein
nr
ID XP_002531792.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0M3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0193190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44835: 331254-333975 , PASA_asmbl_44836: 331262-334060
cDNA
(Sanger)
(ID:Location)		 029_J12.ab1: 331405-334060

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001846_080 0.0817871229 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
3 Hb_000603_200 0.0860523794 - - PREDICTED: myosin-15 [Jatropha curcas]
4 Hb_002172_030 0.0948438113 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
5 Hb_000172_530 0.0953320237 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
6 Hb_006478_070 0.0981501776 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
7 Hb_001635_220 0.098508016 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
8 Hb_012654_020 0.0985844431 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001776_080 0.1078594081 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
10 Hb_098315_100 0.1094101877 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
11 Hb_000320_440 0.1096017016 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
12 Hb_000365_350 0.1096516445 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
13 Hb_000926_270 0.1126951861 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
14 Hb_012807_120 0.1141117284 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_000050_120 0.1149716548 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
16 Hb_003777_220 0.1170610037 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
17 Hb_003506_040 0.1180204461 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
18 Hb_011609_190 0.1193261444 - - 14-3-3 protein 2 [Hevea brasiliensis]
19 Hb_003507_020 0.1211115099 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
20 Hb_011316_030 0.123285045 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_370 Hb_000483_370 Hb_001846_080 Hb_001846_080 Hb_000483_370--Hb_001846_080 Hb_000603_200 Hb_000603_200 Hb_000483_370--Hb_000603_200 Hb_002172_030 Hb_002172_030 Hb_000483_370--Hb_002172_030 Hb_000172_530 Hb_000172_530 Hb_000483_370--Hb_000172_530 Hb_006478_070 Hb_006478_070 Hb_000483_370--Hb_006478_070 Hb_001635_220 Hb_001635_220 Hb_000483_370--Hb_001635_220 Hb_001846_080--Hb_000172_530 Hb_001846_080--Hb_002172_030 Hb_001846_080--Hb_006478_070 Hb_012654_020 Hb_012654_020 Hb_001846_080--Hb_012654_020 Hb_000320_440 Hb_000320_440 Hb_001846_080--Hb_000320_440 Hb_001252_160 Hb_001252_160 Hb_000603_200--Hb_001252_160 Hb_002989_080 Hb_002989_080 Hb_000603_200--Hb_002989_080 Hb_003507_020 Hb_003507_020 Hb_000603_200--Hb_003507_020 Hb_043637_010 Hb_043637_010 Hb_000603_200--Hb_043637_010 Hb_007178_010 Hb_007178_010 Hb_000603_200--Hb_007178_010 Hb_002172_030--Hb_012654_020 Hb_005410_010 Hb_005410_010 Hb_002172_030--Hb_005410_010 Hb_000050_120 Hb_000050_120 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_154381_050 Hb_154381_050 Hb_002172_030--Hb_154381_050 Hb_001523_010 Hb_001523_010 Hb_000172_530--Hb_001523_010 Hb_000172_530--Hb_000320_440 Hb_000172_530--Hb_006478_070 Hb_000466_060 Hb_000466_060 Hb_000172_530--Hb_000466_060 Hb_005016_030 Hb_005016_030 Hb_000172_530--Hb_005016_030 Hb_012807_120 Hb_012807_120 Hb_006478_070--Hb_012807_120 Hb_003506_040 Hb_003506_040 Hb_006478_070--Hb_003506_040 Hb_001140_080 Hb_001140_080 Hb_006478_070--Hb_001140_080 Hb_006478_070--Hb_000320_440 Hb_003913_100 Hb_003913_100 Hb_001635_220--Hb_003913_100 Hb_001635_220--Hb_000172_530 Hb_004254_040 Hb_004254_040 Hb_001635_220--Hb_004254_040 Hb_001635_220--Hb_000603_200 Hb_000038_130 Hb_000038_130 Hb_001635_220--Hb_000038_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1642.01 147.491 21.6467 22.7134 1524.98 1522.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
588.464 395.485 539.557 192.734 15.6013

CAGE analysis