Hb_002835_190

Information

Type -
Description -
Location Contig2835: 144923-153485
Sequence    

Annotation

kegg
ID rcu:RCOM_1508700
description TRANSPARENT TESTA 12 protein, putative
nr
ID XP_002511322.1
description TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
swissprot
ID Q9LUH3
description MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1
trembl
ID B9RAU7
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1508700 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29642: 150224-150712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_190 0.0 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
2 Hb_003913_100 0.0923280783 - - copper amine oxidase, putative [Ricinus communis]
3 Hb_001252_160 0.1048268763 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
4 Hb_000329_620 0.105461027 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
5 Hb_005496_060 0.1086893809 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
6 Hb_002942_030 0.1093804872 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
7 Hb_013479_020 0.1119443047 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
8 Hb_002374_340 0.1140153662 - - Two-component response regulator ARR9, putative [Ricinus communis]
9 Hb_019654_070 0.1237906946 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
10 Hb_001504_170 0.1243986085 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
11 Hb_000155_080 0.1280954122 - - guanylate-binding family protein [Populus trichocarpa]
12 Hb_012654_020 0.1303822724 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003304_080 0.1317329866 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
14 Hb_000603_200 0.1350940023 - - PREDICTED: myosin-15 [Jatropha curcas]
15 Hb_000172_610 0.1352147125 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
16 Hb_000175_520 0.1367953584 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_003656_030 0.1372138961 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
18 Hb_007810_040 0.1376813452 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
19 Hb_098315_100 0.1387257963 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
20 Hb_000179_250 0.1422115306 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]

Gene co-expression network

sample Hb_002835_190 Hb_002835_190 Hb_003913_100 Hb_003913_100 Hb_002835_190--Hb_003913_100 Hb_001252_160 Hb_001252_160 Hb_002835_190--Hb_001252_160 Hb_000329_620 Hb_000329_620 Hb_002835_190--Hb_000329_620 Hb_005496_060 Hb_005496_060 Hb_002835_190--Hb_005496_060 Hb_002942_030 Hb_002942_030 Hb_002835_190--Hb_002942_030 Hb_013479_020 Hb_013479_020 Hb_002835_190--Hb_013479_020 Hb_001635_220 Hb_001635_220 Hb_003913_100--Hb_001635_220 Hb_000320_440 Hb_000320_440 Hb_003913_100--Hb_000320_440 Hb_001776_080 Hb_001776_080 Hb_003913_100--Hb_001776_080 Hb_012654_020 Hb_012654_020 Hb_003913_100--Hb_012654_020 Hb_000172_530 Hb_000172_530 Hb_003913_100--Hb_000172_530 Hb_000603_200 Hb_000603_200 Hb_001252_160--Hb_000603_200 Hb_003507_020 Hb_003507_020 Hb_001252_160--Hb_003507_020 Hb_000061_410 Hb_000061_410 Hb_001252_160--Hb_000061_410 Hb_001252_160--Hb_000329_620 Hb_003627_020 Hb_003627_020 Hb_001252_160--Hb_003627_020 Hb_007158_030 Hb_007158_030 Hb_000329_620--Hb_007158_030 Hb_029464_010 Hb_029464_010 Hb_000329_620--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_000329_620--Hb_009193_130 Hb_005271_030 Hb_005271_030 Hb_000329_620--Hb_005271_030 Hb_006557_010 Hb_006557_010 Hb_005496_060--Hb_006557_010 Hb_004657_010 Hb_004657_010 Hb_005496_060--Hb_004657_010 Hb_000340_480 Hb_000340_480 Hb_005496_060--Hb_000340_480 Hb_002374_340 Hb_002374_340 Hb_005496_060--Hb_002374_340 Hb_000753_260 Hb_000753_260 Hb_005496_060--Hb_000753_260 Hb_001504_170 Hb_001504_170 Hb_002942_030--Hb_001504_170 Hb_002942_030--Hb_013479_020 Hb_004852_020 Hb_004852_020 Hb_002942_030--Hb_004852_020 Hb_026048_090 Hb_026048_090 Hb_002942_030--Hb_026048_090 Hb_000175_520 Hb_000175_520 Hb_002942_030--Hb_000175_520 Hb_001433_170 Hb_001433_170 Hb_002942_030--Hb_001433_170 Hb_013479_020--Hb_001504_170 Hb_019654_070 Hb_019654_070 Hb_013479_020--Hb_019654_070 Hb_000028_050 Hb_000028_050 Hb_013479_020--Hb_000028_050 Hb_000085_340 Hb_000085_340 Hb_013479_020--Hb_000085_340 Hb_013479_020--Hb_003627_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7639 0.853069 0.267649 0.720064 21.9956 18.5543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6914 5.32483 5.29614 1.0081 0.179966

CAGE analysis