Hb_005496_060

Information

Type transcription factor
Description TF Family: LOB
Location Contig5496: 57087-57973
Sequence    

Annotation

kegg
ID rcu:RCOM_1587630
description hypothetical protein
nr
ID XP_012068238.1
description PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
swissprot
ID Q9SN23
description LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1
trembl
ID A0A067LAV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16042 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48211: 56920-57966
cDNA
(Sanger)
(ID:Location)		 025_L09.ab1: 57084-57966 , 041_F20.ab1: 57179-57966

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_060 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
2 Hb_002835_190 0.1086893809 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
3 Hb_006557_010 0.1317547719 - - -
4 Hb_004657_010 0.1365638469 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
5 Hb_000340_480 0.1431160663 - - -
6 Hb_002374_340 0.143937817 - - Two-component response regulator ARR9, putative [Ricinus communis]
7 Hb_000753_260 0.1444358129 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
8 Hb_000329_620 0.149120831 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
9 Hb_001252_160 0.1580965307 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
10 Hb_004852_020 0.1602396995 - - -
11 Hb_000175_520 0.1641140417 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_002890_220 0.1702241015 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
13 Hb_003913_100 0.1722151537 - - copper amine oxidase, putative [Ricinus communis]
14 Hb_004449_010 0.1726705837 - - lipase [Ricinus communis]
15 Hb_029879_080 0.1732832592 - - unknown [Populus trichocarpa]
16 Hb_002942_030 0.1765434939 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
17 Hb_004375_060 0.1822464026 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
18 Hb_007317_220 0.1829964762 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
19 Hb_001504_170 0.1875730173 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
20 Hb_017134_040 0.1885599789 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]

Gene co-expression network

sample Hb_005496_060 Hb_005496_060 Hb_002835_190 Hb_002835_190 Hb_005496_060--Hb_002835_190 Hb_006557_010 Hb_006557_010 Hb_005496_060--Hb_006557_010 Hb_004657_010 Hb_004657_010 Hb_005496_060--Hb_004657_010 Hb_000340_480 Hb_000340_480 Hb_005496_060--Hb_000340_480 Hb_002374_340 Hb_002374_340 Hb_005496_060--Hb_002374_340 Hb_000753_260 Hb_000753_260 Hb_005496_060--Hb_000753_260 Hb_003913_100 Hb_003913_100 Hb_002835_190--Hb_003913_100 Hb_001252_160 Hb_001252_160 Hb_002835_190--Hb_001252_160 Hb_000329_620 Hb_000329_620 Hb_002835_190--Hb_000329_620 Hb_002942_030 Hb_002942_030 Hb_002835_190--Hb_002942_030 Hb_013479_020 Hb_013479_020 Hb_002835_190--Hb_013479_020 Hb_006557_010--Hb_004657_010 Hb_006557_010--Hb_000329_620 Hb_004449_010 Hb_004449_010 Hb_006557_010--Hb_004449_010 Hb_006557_010--Hb_002835_190 Hb_000352_150 Hb_000352_150 Hb_006557_010--Hb_000352_150 Hb_004657_010--Hb_004449_010 Hb_004657_010--Hb_000329_620 Hb_004657_010--Hb_000352_150 Hb_004657_010--Hb_002835_190 Hb_002081_100 Hb_002081_100 Hb_000340_480--Hb_002081_100 Hb_004375_060 Hb_004375_060 Hb_000340_480--Hb_004375_060 Hb_000612_070 Hb_000612_070 Hb_000340_480--Hb_000612_070 Hb_000340_480--Hb_004449_010 Hb_000340_480--Hb_002835_190 Hb_002890_220 Hb_002890_220 Hb_002374_340--Hb_002890_220 Hb_002374_340--Hb_002942_030 Hb_017134_040 Hb_017134_040 Hb_002374_340--Hb_017134_040 Hb_005245_090 Hb_005245_090 Hb_002374_340--Hb_005245_090 Hb_007317_220 Hb_007317_220 Hb_002374_340--Hb_007317_220 Hb_000771_140 Hb_000771_140 Hb_002374_340--Hb_000771_140 Hb_000784_130 Hb_000784_130 Hb_000753_260--Hb_000784_130 Hb_000753_260--Hb_002890_220 Hb_002298_040 Hb_002298_040 Hb_000753_260--Hb_002298_040 Hb_005298_030 Hb_005298_030 Hb_000753_260--Hb_005298_030 Hb_000753_260--Hb_002374_340 Hb_029879_080 Hb_029879_080 Hb_000753_260--Hb_029879_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
350.251 2.22325 0.235051 3.76849 589.141 398.922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
553.707 147.394 112.982 23.6246 0.109197

CAGE analysis