Hb_004375_060

Information

Type -
Description -
Location Contig4375: 48114-50588
Sequence    

Annotation

kegg
ID rcu:RCOM_1179450
description hypothetical protein
nr
ID XP_012082814.1
description PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13967 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_060 0.0 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
2 Hb_002081_100 0.114675205 - - -
3 Hb_000340_480 0.1265768096 - - -
4 Hb_178345_010 0.1288066012 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
5 Hb_001504_170 0.1390405606 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
6 Hb_013479_020 0.1478695736 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
7 Hb_004025_030 0.1493775413 - - -
8 Hb_000175_520 0.1598067598 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_004852_020 0.1598112527 - - -
10 Hb_000612_070 0.1603212982 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002835_190 0.1649767155 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
12 Hb_012395_100 0.1666960447 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
13 Hb_002851_060 0.1674845404 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
14 Hb_000329_610 0.1686469893 - - conserved hypothetical protein [Ricinus communis]
15 Hb_077562_040 0.1696171238 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
16 Hb_002942_030 0.1697469251 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
17 Hb_003507_040 0.1697785733 - - hypothetical protein RCOM_1685970 [Ricinus communis]
18 Hb_004449_010 0.1738633204 - - lipase [Ricinus communis]
19 Hb_004657_010 0.1748138073 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
20 Hb_044662_040 0.1781720372 - - -

Gene co-expression network

sample Hb_004375_060 Hb_004375_060 Hb_002081_100 Hb_002081_100 Hb_004375_060--Hb_002081_100 Hb_000340_480 Hb_000340_480 Hb_004375_060--Hb_000340_480 Hb_178345_010 Hb_178345_010 Hb_004375_060--Hb_178345_010 Hb_001504_170 Hb_001504_170 Hb_004375_060--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_004375_060--Hb_013479_020 Hb_004025_030 Hb_004025_030 Hb_004375_060--Hb_004025_030 Hb_002081_100--Hb_000340_480 Hb_064201_010 Hb_064201_010 Hb_002081_100--Hb_064201_010 Hb_000329_620 Hb_000329_620 Hb_002081_100--Hb_000329_620 Hb_002081_100--Hb_178345_010 Hb_000061_410 Hb_000061_410 Hb_002081_100--Hb_000061_410 Hb_000612_070 Hb_000612_070 Hb_000340_480--Hb_000612_070 Hb_005496_060 Hb_005496_060 Hb_000340_480--Hb_005496_060 Hb_004449_010 Hb_004449_010 Hb_000340_480--Hb_004449_010 Hb_002835_190 Hb_002835_190 Hb_000340_480--Hb_002835_190 Hb_002851_060 Hb_002851_060 Hb_178345_010--Hb_002851_060 Hb_044662_040 Hb_044662_040 Hb_178345_010--Hb_044662_040 Hb_000977_140 Hb_000977_140 Hb_178345_010--Hb_000977_140 Hb_012395_100 Hb_012395_100 Hb_178345_010--Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_178345_010--Hb_000175_520 Hb_001504_170--Hb_013479_020 Hb_002942_030 Hb_002942_030 Hb_001504_170--Hb_002942_030 Hb_002955_030 Hb_002955_030 Hb_001504_170--Hb_002955_030 Hb_003786_110 Hb_003786_110 Hb_001504_170--Hb_003786_110 Hb_000345_560 Hb_000345_560 Hb_001504_170--Hb_000345_560 Hb_000329_610 Hb_000329_610 Hb_001504_170--Hb_000329_610 Hb_013479_020--Hb_002942_030 Hb_019654_070 Hb_019654_070 Hb_013479_020--Hb_019654_070 Hb_000028_050 Hb_000028_050 Hb_013479_020--Hb_000028_050 Hb_000085_340 Hb_000085_340 Hb_013479_020--Hb_000085_340 Hb_003627_020 Hb_003627_020 Hb_013479_020--Hb_003627_020 Hb_077562_040 Hb_077562_040 Hb_004025_030--Hb_077562_040 Hb_000184_120 Hb_000184_120 Hb_004025_030--Hb_000184_120 Hb_023675_010 Hb_023675_010 Hb_004025_030--Hb_023675_010 Hb_000563_530 Hb_000563_530 Hb_004025_030--Hb_000563_530 Hb_027445_060 Hb_027445_060 Hb_004025_030--Hb_027445_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14725 0 0.182696 0.0207379 1.48991 1.88329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18643 0.782027 0.236768 0.0604363 0

CAGE analysis