Hb_027445_060

Information

Type -
Description -
Location Contig27445: 62714-64337
Sequence    

Annotation

kegg
ID rcu:RCOM_1064130
description Pescadillo, putative
nr
ID XP_012072323.1
description PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
swissprot
ID A8JBB2
description Pescadillo homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_206018 PE=3 SV=1
trembl
ID A0A067LGE4
description Pescadillo homolog OS=Jatropha curcas GN=JCGZ_10263 PE=3 SV=1
Gene Ontology
ID GO:0005654
description pescadillo homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027445_060 0.0 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
2 Hb_121236_010 0.1112983686 - - geranyl-diphosphate synthase [Hevea brasiliensis]
3 Hb_115919_010 0.1157118981 - - unknown [Lotus japonicus]
4 Hb_068946_010 0.1307265212 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
5 Hb_001095_060 0.1362152085 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
6 Hb_003813_100 0.1417769505 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
7 Hb_005305_060 0.1426439745 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
8 Hb_003507_040 0.143777108 - - hypothetical protein RCOM_1685970 [Ricinus communis]
9 Hb_001488_110 0.1450691616 - - -
10 Hb_077562_040 0.1453415505 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
11 Hb_004025_030 0.1508897143 - - -
12 Hb_144898_010 0.1546990133 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_033448_010 0.1547052161 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
14 Hb_000155_070 0.1587055421 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
15 Hb_000107_140 0.1592716613 - - -
16 Hb_011016_090 0.1597377028 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
17 Hb_000914_060 0.1599538185 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
18 Hb_003327_060 0.1616207815 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
19 Hb_023675_010 0.1626162538 - - -
20 Hb_003627_020 0.162999944 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]

Gene co-expression network

sample Hb_027445_060 Hb_027445_060 Hb_121236_010 Hb_121236_010 Hb_027445_060--Hb_121236_010 Hb_115919_010 Hb_115919_010 Hb_027445_060--Hb_115919_010 Hb_068946_010 Hb_068946_010 Hb_027445_060--Hb_068946_010 Hb_001095_060 Hb_001095_060 Hb_027445_060--Hb_001095_060 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_005305_060 Hb_005305_060 Hb_027445_060--Hb_005305_060 Hb_121236_010--Hb_115919_010 Hb_061581_010 Hb_061581_010 Hb_121236_010--Hb_061581_010 Hb_121236_010--Hb_001095_060 Hb_121236_010--Hb_005305_060 Hb_135403_010 Hb_135403_010 Hb_121236_010--Hb_135403_010 Hb_115919_010--Hb_001095_060 Hb_115919_010--Hb_061581_010 Hb_115919_010--Hb_005305_060 Hb_000122_030 Hb_000122_030 Hb_115919_010--Hb_000122_030 Hb_068946_010--Hb_001095_060 Hb_001488_110 Hb_001488_110 Hb_068946_010--Hb_001488_110 Hb_004072_010 Hb_004072_010 Hb_068946_010--Hb_004072_010 Hb_004968_060 Hb_004968_060 Hb_068946_010--Hb_004968_060 Hb_005935_010 Hb_005935_010 Hb_068946_010--Hb_005935_010 Hb_001095_060--Hb_061581_010 Hb_001095_060--Hb_001488_110 Hb_000085_280 Hb_000085_280 Hb_003813_100--Hb_000085_280 Hb_013405_130 Hb_013405_130 Hb_003813_100--Hb_013405_130 Hb_002290_060 Hb_002290_060 Hb_003813_100--Hb_002290_060 Hb_003507_040 Hb_003507_040 Hb_003813_100--Hb_003507_040 Hb_077219_010 Hb_077219_010 Hb_003813_100--Hb_077219_010 Hb_035524_030 Hb_035524_030 Hb_003813_100--Hb_035524_030 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.22168 0.521417 0.104072 1.04244 8.33031 27.7778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.33605 8.85258 4.04309 1.04681 0.154258

CAGE analysis