Hb_001722_020

Information

Type -
Description -
Location Contig1722: 68186-68443
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16223: 67846-70022 , PASA_asmbl_16224: 68371-69389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001722_020 0.0 - - -
2 Hb_088774_010 0.1002841577 - - -
3 Hb_144898_010 0.1371193856 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_005305_060 0.1462773673 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
5 Hb_005965_010 0.1595181475 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
6 Hb_071923_010 0.1637470175 - - -
7 Hb_000295_100 0.1679846262 - - -
8 Hb_005016_150 0.1683664439 - - -
9 Hb_012807_080 0.1716190087 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
10 Hb_000248_010 0.173933493 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
11 Hb_181320_010 0.1755100105 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
12 Hb_002960_050 0.1755801434 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
13 Hb_000200_040 0.1762638846 - - -
14 Hb_006455_110 0.1767298185 - - bromodomain-containing protein, putative [Ricinus communis]
15 Hb_001675_060 0.1812957288 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
16 Hb_000295_090 0.183036524 - - Clathrin light chain 2 [Glycine soja]
17 Hb_124587_010 0.183358645 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
18 Hb_006455_080 0.1835454254 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
19 Hb_176117_010 0.183772019 - - Cold-inducible RNA-binding protein [Morus notabilis]
20 Hb_001513_020 0.1861994547 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001722_020 Hb_001722_020 Hb_088774_010 Hb_088774_010 Hb_001722_020--Hb_088774_010 Hb_144898_010 Hb_144898_010 Hb_001722_020--Hb_144898_010 Hb_005305_060 Hb_005305_060 Hb_001722_020--Hb_005305_060 Hb_005965_010 Hb_005965_010 Hb_001722_020--Hb_005965_010 Hb_071923_010 Hb_071923_010 Hb_001722_020--Hb_071923_010 Hb_000295_100 Hb_000295_100 Hb_001722_020--Hb_000295_100 Hb_088065_010 Hb_088065_010 Hb_088774_010--Hb_088065_010 Hb_015930_010 Hb_015930_010 Hb_088774_010--Hb_015930_010 Hb_000523_100 Hb_000523_100 Hb_088774_010--Hb_000523_100 Hb_088774_010--Hb_071923_010 Hb_000248_010 Hb_000248_010 Hb_088774_010--Hb_000248_010 Hb_000107_140 Hb_000107_140 Hb_144898_010--Hb_000107_140 Hb_181320_010 Hb_181320_010 Hb_144898_010--Hb_181320_010 Hb_144898_010--Hb_005305_060 Hb_005054_070 Hb_005054_070 Hb_144898_010--Hb_005054_070 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_027445_060 Hb_027445_060 Hb_005305_060--Hb_027445_060 Hb_115919_010 Hb_115919_010 Hb_005305_060--Hb_115919_010 Hb_005305_060--Hb_005965_010 Hb_006455_110 Hb_006455_110 Hb_005965_010--Hb_006455_110 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_106005_010 Hb_106005_010 Hb_005965_010--Hb_106005_010 Hb_005965_010--Hb_012807_080 Hb_006455_080 Hb_006455_080 Hb_005965_010--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_005965_010--Hb_006455_090 Hb_002249_110 Hb_002249_110 Hb_071923_010--Hb_002249_110 Hb_071923_010--Hb_144898_010 Hb_000295_090 Hb_000295_090 Hb_071923_010--Hb_000295_090 Hb_003297_020 Hb_003297_020 Hb_071923_010--Hb_003297_020 Hb_000295_100--Hb_006455_110 Hb_000295_100--Hb_006455_080 Hb_000295_100--Hb_006455_090 Hb_002960_050 Hb_002960_050 Hb_000295_100--Hb_002960_050 Hb_000295_100--Hb_012807_080 Hb_000295_100--Hb_005965_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.007 31.7439 20.9712 73.4557 247.505 1130.38
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.248 141.23 32.7391 68.6868 30.7661

CAGE analysis