Hb_015930_010

Information

Type -
Description -
Location Contig15930: 8503-9559
Sequence    

Annotation

kegg
ID gmx:100499930
description uncharacterized LOC100499930
nr
ID NP_001238156.1
description uncharacterized protein LOC100499930 [Glycine max]
swissprot
ID Q9EP71
description Ankycorbin OS=Mus musculus GN=Rai14 PE=1 SV=1
trembl
ID C6SYB0
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0006259
description 26s proteasome non-atpase regulatory subunit 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015930_010 0.0 - - uncharacterized protein LOC100499930 [Glycine max]
2 Hb_088774_010 0.1601500715 - - -
3 Hb_001722_020 0.1978875566 - - -
4 Hb_001846_050 0.2099890369 - - -
5 Hb_009486_010 0.2173685801 - - -
6 Hb_000295_100 0.2236457422 - - -
7 Hb_001675_060 0.2299263194 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
8 Hb_002960_050 0.2329840061 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
9 Hb_007124_010 0.2338872879 - - unnamed protein product [Coffea canephora]
10 Hb_027295_040 0.234158631 - - hypothetical protein MIMGU_mgv1a017500mg [Erythranthe guttata]
11 Hb_103351_010 0.2346376492 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
12 Hb_005933_010 0.2377536621 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
13 Hb_050286_020 0.2379872263 - - -
14 Hb_124587_010 0.2404672695 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
15 Hb_006455_080 0.2424189578 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
16 Hb_032531_060 0.2426760079 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
17 Hb_006455_110 0.2429694123 - - bromodomain-containing protein, putative [Ricinus communis]
18 Hb_000295_090 0.2447202138 - - Clathrin light chain 2 [Glycine soja]
19 Hb_088065_010 0.246981807 - - hypothetical protein glysoja_007934 [Glycine soja]
20 Hb_001662_160 0.2471973308 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]

Gene co-expression network

sample Hb_015930_010 Hb_015930_010 Hb_088774_010 Hb_088774_010 Hb_015930_010--Hb_088774_010 Hb_001722_020 Hb_001722_020 Hb_015930_010--Hb_001722_020 Hb_001846_050 Hb_001846_050 Hb_015930_010--Hb_001846_050 Hb_009486_010 Hb_009486_010 Hb_015930_010--Hb_009486_010 Hb_000295_100 Hb_000295_100 Hb_015930_010--Hb_000295_100 Hb_001675_060 Hb_001675_060 Hb_015930_010--Hb_001675_060 Hb_088774_010--Hb_001722_020 Hb_088065_010 Hb_088065_010 Hb_088774_010--Hb_088065_010 Hb_000523_100 Hb_000523_100 Hb_088774_010--Hb_000523_100 Hb_071923_010 Hb_071923_010 Hb_088774_010--Hb_071923_010 Hb_000248_010 Hb_000248_010 Hb_088774_010--Hb_000248_010 Hb_144898_010 Hb_144898_010 Hb_001722_020--Hb_144898_010 Hb_005305_060 Hb_005305_060 Hb_001722_020--Hb_005305_060 Hb_005965_010 Hb_005965_010 Hb_001722_020--Hb_005965_010 Hb_001722_020--Hb_071923_010 Hb_001722_020--Hb_000295_100 Hb_168343_010 Hb_168343_010 Hb_001846_050--Hb_168343_010 Hb_000445_080 Hb_000445_080 Hb_001846_050--Hb_000445_080 Hb_006455_080 Hb_006455_080 Hb_001846_050--Hb_006455_080 Hb_094647_010 Hb_094647_010 Hb_001846_050--Hb_094647_010 Hb_004738_050 Hb_004738_050 Hb_001846_050--Hb_004738_050 Hb_009486_010--Hb_094647_010 Hb_002205_050 Hb_002205_050 Hb_009486_010--Hb_002205_050 Hb_009486_010--Hb_088774_010 Hb_002849_040 Hb_002849_040 Hb_009486_010--Hb_002849_040 Hb_009486_010--Hb_088065_010 Hb_006455_110 Hb_006455_110 Hb_000295_100--Hb_006455_110 Hb_000295_100--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_000295_100--Hb_006455_090 Hb_002960_050 Hb_002960_050 Hb_000295_100--Hb_002960_050 Hb_012807_080 Hb_012807_080 Hb_000295_100--Hb_012807_080 Hb_000295_100--Hb_005965_010 Hb_005016_150 Hb_005016_150 Hb_001675_060--Hb_005016_150 Hb_003226_170 Hb_003226_170 Hb_001675_060--Hb_003226_170 Hb_001513_020 Hb_001513_020 Hb_001675_060--Hb_001513_020 Hb_000213_060 Hb_000213_060 Hb_001675_060--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_001675_060--Hb_001477_010 Hb_000256_270 Hb_000256_270 Hb_001675_060--Hb_000256_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.58232 0.17333 0.807086 2.07205 7.9093 40.0949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28295 5.06002 3.73099 0.314367 2.52405

CAGE analysis