Hb_002960_050

Information

Type -
Description -
Location Contig2960: 41978-42310
Sequence    

Annotation

kegg
ID rcu:RCOM_1598260
description hypothetical protein
nr
ID XP_012073779.1
description PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08198 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30945: 41766-42510
cDNA
(Sanger)
(ID:Location)		 005_E21.ab1: 41766-42501 , 049_G17.ab1: 41730-42323 , 053_O12.ab1: 41730-42510

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_050 0.0 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
2 Hb_000248_010 0.1152481656 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
3 Hb_000295_100 0.127874474 - - -
4 Hb_002783_060 0.1283809807 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
5 Hb_005965_010 0.1394517168 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
6 Hb_073559_010 0.1506757879 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
7 Hb_106005_010 0.1551193715 - - EG5651 [Manihot esculenta]
8 Hb_169170_010 0.1572896167 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
9 Hb_000248_030 0.1616693525 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
10 Hb_006455_110 0.1616775418 - - bromodomain-containing protein, putative [Ricinus communis]
11 Hb_005731_140 0.1708457891 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
12 Hb_000976_030 0.1724760524 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
13 Hb_006846_140 0.1750859687 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001722_020 0.1755801434 - - -
15 Hb_088065_010 0.1789788009 - - hypothetical protein glysoja_007934 [Glycine soja]
16 Hb_000808_240 0.1791096349 - - -
17 Hb_075964_010 0.1799323106 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
18 Hb_005933_010 0.1854804132 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
19 Hb_003581_010 0.1861391662 - - hypothetical protein VITISV_004687 [Vitis vinifera]
20 Hb_032531_060 0.1895447693 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]

Gene co-expression network

sample Hb_002960_050 Hb_002960_050 Hb_000248_010 Hb_000248_010 Hb_002960_050--Hb_000248_010 Hb_000295_100 Hb_000295_100 Hb_002960_050--Hb_000295_100 Hb_002783_060 Hb_002783_060 Hb_002960_050--Hb_002783_060 Hb_005965_010 Hb_005965_010 Hb_002960_050--Hb_005965_010 Hb_073559_010 Hb_073559_010 Hb_002960_050--Hb_073559_010 Hb_106005_010 Hb_106005_010 Hb_002960_050--Hb_106005_010 Hb_000248_030 Hb_000248_030 Hb_000248_010--Hb_000248_030 Hb_000248_010--Hb_073559_010 Hb_001235_060 Hb_001235_060 Hb_000248_010--Hb_001235_060 Hb_088065_010 Hb_088065_010 Hb_000248_010--Hb_088065_010 Hb_005933_010 Hb_005933_010 Hb_000248_010--Hb_005933_010 Hb_006455_110 Hb_006455_110 Hb_000295_100--Hb_006455_110 Hb_006455_080 Hb_006455_080 Hb_000295_100--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_000295_100--Hb_006455_090 Hb_012807_080 Hb_012807_080 Hb_000295_100--Hb_012807_080 Hb_000295_100--Hb_005965_010 Hb_000810_020 Hb_000810_020 Hb_002783_060--Hb_000810_020 Hb_006846_140 Hb_006846_140 Hb_002783_060--Hb_006846_140 Hb_005085_030 Hb_005085_030 Hb_002783_060--Hb_005085_030 Hb_005731_140 Hb_005731_140 Hb_002783_060--Hb_005731_140 Hb_007124_010 Hb_007124_010 Hb_002783_060--Hb_007124_010 Hb_005965_010--Hb_006455_110 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_005965_010--Hb_106005_010 Hb_005965_010--Hb_012807_080 Hb_005965_010--Hb_006455_080 Hb_005965_010--Hb_006455_090 Hb_073559_010--Hb_088065_010 Hb_073559_010--Hb_000248_030 Hb_168737_010 Hb_168737_010 Hb_073559_010--Hb_168737_010 Hb_073559_010--Hb_005965_010 Hb_000001_040 Hb_000001_040 Hb_106005_010--Hb_000001_040 Hb_106005_010--Hb_005731_140 Hb_002482_060 Hb_002482_060 Hb_106005_010--Hb_002482_060 Hb_007188_020 Hb_007188_020 Hb_106005_010--Hb_007188_020 Hb_136731_010 Hb_136731_010 Hb_106005_010--Hb_136731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2052 6.85092 1.55831 29.2092 28.4545 221.225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1352 24.7773 24.697 27.3442 8.61004

CAGE analysis