Hb_168737_010

Information

Type -
Description -
Location Contig168737: 1-399
Sequence    

Annotation

kegg
ID rcu:RCOM_1494390
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_002516045.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q8GX23
description Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1
trembl
ID B9RQM6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494390 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168737_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_003581_010 0.1403766784 - - hypothetical protein VITISV_004687 [Vitis vinifera]
3 Hb_073559_010 0.1600451737 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
4 Hb_032225_020 0.1678352435 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
5 Hb_005731_140 0.1693786289 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
6 Hb_000265_130 0.1735982803 - - -
7 Hb_000832_240 0.1749395549 - - conserved hypothetical protein [Ricinus communis]
8 Hb_034579_010 0.1766073702 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
9 Hb_106005_010 0.1778808531 - - EG5651 [Manihot esculenta]
10 Hb_124141_010 0.177989076 - - plant origin recognition complex subunit, putative [Ricinus communis]
11 Hb_010565_040 0.1786147018 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
12 Hb_000001_040 0.1799005982 - - unnamed protein product [Coffea canephora]
13 Hb_007484_040 0.1840682139 - - -
14 Hb_116632_010 0.1859782638 - - unnamed protein product [Vitis vinifera]
15 Hb_032531_060 0.1867663004 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
16 Hb_166480_010 0.1870634443 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
17 Hb_000204_020 0.1880267232 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
18 Hb_177103_010 0.1994883786 - - PREDICTED: histone H2AX [Elaeis guineensis]
19 Hb_000289_080 0.2039144569 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003029_100 0.2068648198 - - -

Gene co-expression network

sample Hb_168737_010 Hb_168737_010 Hb_003581_010 Hb_003581_010 Hb_168737_010--Hb_003581_010 Hb_073559_010 Hb_073559_010 Hb_168737_010--Hb_073559_010 Hb_032225_020 Hb_032225_020 Hb_168737_010--Hb_032225_020 Hb_005731_140 Hb_005731_140 Hb_168737_010--Hb_005731_140 Hb_000265_130 Hb_000265_130 Hb_168737_010--Hb_000265_130 Hb_000832_240 Hb_000832_240 Hb_168737_010--Hb_000832_240 Hb_000001_040 Hb_000001_040 Hb_003581_010--Hb_000001_040 Hb_003581_010--Hb_000265_130 Hb_128998_010 Hb_128998_010 Hb_003581_010--Hb_128998_010 Hb_000007_460 Hb_000007_460 Hb_003581_010--Hb_000007_460 Hb_116632_010 Hb_116632_010 Hb_003581_010--Hb_116632_010 Hb_000248_010 Hb_000248_010 Hb_073559_010--Hb_000248_010 Hb_088065_010 Hb_088065_010 Hb_073559_010--Hb_088065_010 Hb_002960_050 Hb_002960_050 Hb_073559_010--Hb_002960_050 Hb_000248_030 Hb_000248_030 Hb_073559_010--Hb_000248_030 Hb_005965_010 Hb_005965_010 Hb_073559_010--Hb_005965_010 Hb_106005_010 Hb_106005_010 Hb_032225_020--Hb_106005_010 Hb_032225_020--Hb_088065_010 Hb_032225_020--Hb_003581_010 Hb_032225_020--Hb_073559_010 Hb_032225_020--Hb_000265_130 Hb_032531_060 Hb_032531_060 Hb_005731_140--Hb_032531_060 Hb_002482_060 Hb_002482_060 Hb_005731_140--Hb_002482_060 Hb_005731_140--Hb_106005_010 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_000265_130--Hb_000001_040 Hb_000261_360 Hb_000261_360 Hb_000265_130--Hb_000261_360 Hb_010504_030 Hb_010504_030 Hb_000265_130--Hb_010504_030 Hb_000176_120 Hb_000176_120 Hb_000265_130--Hb_000176_120 Hb_007188_020 Hb_007188_020 Hb_000265_130--Hb_007188_020 Hb_000122_030 Hb_000122_030 Hb_000832_240--Hb_000122_030 Hb_121550_010 Hb_121550_010 Hb_000832_240--Hb_121550_010 Hb_001057_050 Hb_001057_050 Hb_000832_240--Hb_001057_050 Hb_000832_240--Hb_000001_040 Hb_005305_060 Hb_005305_060 Hb_000832_240--Hb_005305_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7201 10.4994 4.93438 40.1005 3.56053 273.802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.2909 60.7112 13.0796 18.0701 4.97163

CAGE analysis