Hb_000122_030

Information

Type -
Description -
Location Contig122: 17391-18741
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010269433.1
description PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID K4N2I4
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06652: 9966-16477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_030 0.0 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
2 Hb_001310_070 0.1461026176 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
3 Hb_001057_050 0.1586584583 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
4 Hb_115919_010 0.1602966522 - - unknown [Lotus japonicus]
5 Hb_000003_350 0.1646434103 - - hypothetical protein POPTR_1155s00200g, partial [Populus trichocarpa]
6 Hb_004117_180 0.164785143 - - -
7 Hb_005305_060 0.174851032 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
8 Hb_000563_530 0.177644892 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
9 Hb_001488_110 0.1779946387 - - -
10 Hb_000193_350 0.1779978416 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
11 Hb_000832_240 0.1791254349 - - conserved hypothetical protein [Ricinus communis]
12 Hb_121236_010 0.1796090835 - - geranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_000329_770 0.1807514771 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027445_060 0.1834381999 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
15 Hb_000184_120 0.1835179323 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
16 Hb_008221_110 0.1842097508 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
17 Hb_135403_010 0.1851269869 - - HEV1.1 [Hevea brasiliensis]
18 Hb_008725_200 0.1854940568 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
19 Hb_004502_050 0.187873562 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
20 Hb_033448_010 0.1892013869 - - hypothetical protein JCGZ_19772 [Jatropha curcas]

Gene co-expression network

sample Hb_000122_030 Hb_000122_030 Hb_001310_070 Hb_001310_070 Hb_000122_030--Hb_001310_070 Hb_001057_050 Hb_001057_050 Hb_000122_030--Hb_001057_050 Hb_115919_010 Hb_115919_010 Hb_000122_030--Hb_115919_010 Hb_000003_350 Hb_000003_350 Hb_000122_030--Hb_000003_350 Hb_004117_180 Hb_004117_180 Hb_000122_030--Hb_004117_180 Hb_005305_060 Hb_005305_060 Hb_000122_030--Hb_005305_060 Hb_008221_110 Hb_008221_110 Hb_001310_070--Hb_008221_110 Hb_001310_070--Hb_001057_050 Hb_008725_200 Hb_008725_200 Hb_001310_070--Hb_008725_200 Hb_000127_090 Hb_000127_090 Hb_001310_070--Hb_000127_090 Hb_102156_010 Hb_102156_010 Hb_001310_070--Hb_102156_010 Hb_004807_060 Hb_004807_060 Hb_001057_050--Hb_004807_060 Hb_000193_350 Hb_000193_350 Hb_001057_050--Hb_000193_350 Hb_001057_050--Hb_102156_010 Hb_000175_400 Hb_000175_400 Hb_001057_050--Hb_000175_400 Hb_017711_010 Hb_017711_010 Hb_001057_050--Hb_017711_010 Hb_002259_150 Hb_002259_150 Hb_001057_050--Hb_002259_150 Hb_121236_010 Hb_121236_010 Hb_115919_010--Hb_121236_010 Hb_027445_060 Hb_027445_060 Hb_115919_010--Hb_027445_060 Hb_001095_060 Hb_001095_060 Hb_115919_010--Hb_001095_060 Hb_061581_010 Hb_061581_010 Hb_115919_010--Hb_061581_010 Hb_115919_010--Hb_005305_060 Hb_000243_010 Hb_000243_010 Hb_000003_350--Hb_000243_010 Hb_000003_350--Hb_002259_150 Hb_001629_100 Hb_001629_100 Hb_000003_350--Hb_001629_100 Hb_000003_350--Hb_000175_400 Hb_000003_350--Hb_000193_350 Hb_000003_350--Hb_001057_050 Hb_004117_180--Hb_000193_350 Hb_011016_090 Hb_011016_090 Hb_004117_180--Hb_011016_090 Hb_011174_010 Hb_011174_010 Hb_004117_180--Hb_011174_010 Hb_000101_090 Hb_000101_090 Hb_004117_180--Hb_000101_090 Hb_004117_180--Hb_102156_010 Hb_002272_260 Hb_002272_260 Hb_004117_180--Hb_002272_260 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.973851 0.143219 0 1.00599 2.31002 9.44855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.64864 5.17272 1.22305 0.650052 0

CAGE analysis