Hb_008221_110

Information

Type -
Description -
Location Contig8221: 54191-54749
Sequence    

Annotation

kegg
ID rcu:RCOM_1591240
description zinc finger protein, putative
nr
ID XP_012085953.1
description PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
swissprot
ID Q21H37
description Chaperone protein DnaJ OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dnaJ PE=3 SV=1
trembl
ID A0A067K1V6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22451 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59615: 53953-54937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008221_110 0.0 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
2 Hb_175976_010 0.1083281353 - - -
3 Hb_000127_090 0.1146449918 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001017_060 0.1351947234 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_001310_070 0.1470341093 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
6 Hb_010368_030 0.1503956038 - - BnaA07g35570D [Brassica napus]
7 Hb_007534_020 0.1522874096 - - -
8 Hb_006995_040 0.1529678505 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
9 Hb_166480_010 0.154878306 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
10 Hb_007545_050 0.1606863424 - - -
11 Hb_000120_190 0.1624109317 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
12 Hb_000258_030 0.1636859773 - - -
13 Hb_000001_040 0.1685002697 - - unnamed protein product [Coffea canephora]
14 Hb_000265_130 0.1759260001 - - -
15 Hb_014834_140 0.1776404882 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
16 Hb_001057_050 0.1820087171 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
17 Hb_000122_030 0.1842097508 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
18 Hb_000994_110 0.1868030927 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002482_060 0.1880882224 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
20 Hb_000648_030 0.1897784366 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_008221_110 Hb_008221_110 Hb_175976_010 Hb_175976_010 Hb_008221_110--Hb_175976_010 Hb_000127_090 Hb_000127_090 Hb_008221_110--Hb_000127_090 Hb_001017_060 Hb_001017_060 Hb_008221_110--Hb_001017_060 Hb_001310_070 Hb_001310_070 Hb_008221_110--Hb_001310_070 Hb_010368_030 Hb_010368_030 Hb_008221_110--Hb_010368_030 Hb_007534_020 Hb_007534_020 Hb_008221_110--Hb_007534_020 Hb_175976_010--Hb_010368_030 Hb_175976_010--Hb_007534_020 Hb_000120_190 Hb_000120_190 Hb_175976_010--Hb_000120_190 Hb_175976_010--Hb_000127_090 Hb_175976_010--Hb_001017_060 Hb_166480_010 Hb_166480_010 Hb_000127_090--Hb_166480_010 Hb_000258_030 Hb_000258_030 Hb_000127_090--Hb_000258_030 Hb_106005_010 Hb_106005_010 Hb_000127_090--Hb_106005_010 Hb_000127_090--Hb_000120_190 Hb_001017_060--Hb_007534_020 Hb_001017_060--Hb_000258_030 Hb_014834_040 Hb_014834_040 Hb_001017_060--Hb_014834_040 Hb_011644_010 Hb_011644_010 Hb_001017_060--Hb_011644_010 Hb_000122_030 Hb_000122_030 Hb_001310_070--Hb_000122_030 Hb_001057_050 Hb_001057_050 Hb_001310_070--Hb_001057_050 Hb_008725_200 Hb_008725_200 Hb_001310_070--Hb_008725_200 Hb_001310_070--Hb_000127_090 Hb_102156_010 Hb_102156_010 Hb_001310_070--Hb_102156_010 Hb_000086_190 Hb_000086_190 Hb_010368_030--Hb_000086_190 Hb_010368_030--Hb_000120_190 Hb_010368_030--Hb_007534_020 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_010368_030--Hb_166480_010 Hb_007534_020--Hb_000127_090 Hb_006065_040 Hb_006065_040 Hb_007534_020--Hb_006065_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50374 0.572997 0 11.1149 2.83674 28.8423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7875 17.4111 4.47881 2.55087 0.653675

CAGE analysis