Hb_106005_010

Information

Type -
Description -
Location Contig106005: 4848-5099
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02790g
description hypothetical protein
nr
ID AGT97364.1
description EG5651 [Manihot esculenta]
swissprot
ID -
description -
trembl
ID U3GP03
description EG5651 OS=Manihot esculenta GN=EG5651 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 053_F09.ab1: 4599-5111

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106005_010 0.0 - - EG5651 [Manihot esculenta]
2 Hb_000001_040 0.115951623 - - unnamed protein product [Coffea canephora]
3 Hb_005731_140 0.1251189792 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
4 Hb_005965_010 0.1298829371 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
5 Hb_002482_060 0.1329275104 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
6 Hb_007188_020 0.1354068155 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
7 Hb_136731_010 0.1419191411 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
8 Hb_032927_010 0.143123173 - - -
9 Hb_000127_090 0.1492652429 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003581_010 0.1518650355 - - hypothetical protein VITISV_004687 [Vitis vinifera]
11 Hb_000265_130 0.1529176587 - - -
12 Hb_006502_080 0.1540300023 - - -
13 Hb_002960_050 0.1551193715 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
14 Hb_166480_010 0.1579382661 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
15 Hb_128998_010 0.1582435065 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
16 Hb_006487_060 0.1588318705 - - Defective in cullin neddylation protein, putative [Ricinus communis]
17 Hb_006455_110 0.1592627744 - - bromodomain-containing protein, putative [Ricinus communis]
18 Hb_032225_020 0.1600906745 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
19 Hb_007012_020 0.1601989858 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
20 Hb_001976_050 0.1626153425 - - PREDICTED: protein SKIP34 [Jatropha curcas]

Gene co-expression network

sample Hb_106005_010 Hb_106005_010 Hb_000001_040 Hb_000001_040 Hb_106005_010--Hb_000001_040 Hb_005731_140 Hb_005731_140 Hb_106005_010--Hb_005731_140 Hb_005965_010 Hb_005965_010 Hb_106005_010--Hb_005965_010 Hb_002482_060 Hb_002482_060 Hb_106005_010--Hb_002482_060 Hb_007188_020 Hb_007188_020 Hb_106005_010--Hb_007188_020 Hb_136731_010 Hb_136731_010 Hb_106005_010--Hb_136731_010 Hb_000265_130 Hb_000265_130 Hb_000001_040--Hb_000265_130 Hb_000001_040--Hb_007188_020 Hb_000176_120 Hb_000176_120 Hb_000001_040--Hb_000176_120 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_003581_010 Hb_003581_010 Hb_000001_040--Hb_003581_010 Hb_032531_060 Hb_032531_060 Hb_005731_140--Hb_032531_060 Hb_005731_140--Hb_002482_060 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_006455_110 Hb_006455_110 Hb_005965_010--Hb_006455_110 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_012807_080 Hb_012807_080 Hb_005965_010--Hb_012807_080 Hb_006455_080 Hb_006455_080 Hb_005965_010--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_005965_010--Hb_006455_090 Hb_000120_190 Hb_000120_190 Hb_002482_060--Hb_000120_190 Hb_166480_010 Hb_166480_010 Hb_002482_060--Hb_166480_010 Hb_006198_090 Hb_006198_090 Hb_002482_060--Hb_006198_090 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_152554_010 Hb_152554_010 Hb_007188_020--Hb_152554_010 Hb_116632_010 Hb_116632_010 Hb_007188_020--Hb_116632_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040 Hb_005085_030 Hb_005085_030 Hb_007188_020--Hb_005085_030 Hb_001377_180 Hb_001377_180 Hb_136731_010--Hb_001377_180 Hb_005054_070 Hb_005054_070 Hb_136731_010--Hb_005054_070 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_136731_010--Hb_000812_040 Hb_006502_080 Hb_006502_080 Hb_136731_010--Hb_006502_080 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
897.386 390.028 219.195 1398.02 746.658 7291.91
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1521.1 2087.25 1257.65 517.281 218.403

CAGE analysis