Hb_116632_010

Information

Type -
Description -
Location Contig116632: 173-926
Sequence    

Annotation

kegg
ID pda:103722283
description 40S ribosomal protein S4-1-like
nr
ID CBI18118.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P46299
description 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1
trembl
ID I3SLR4
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05110: 90-274 , PASA_asmbl_05111: 521-654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116632_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_007188_020 0.1041530486 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
3 Hb_068014_010 0.1388688306 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
4 Hb_003581_010 0.1423805102 - - hypothetical protein VITISV_004687 [Vitis vinifera]
5 Hb_005085_030 0.1429631486 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
6 Hb_000265_130 0.147834401 - - -
7 Hb_017462_010 0.1496353612 - - -
8 Hb_007484_040 0.151801165 - - -
9 Hb_169170_010 0.1552906447 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
10 Hb_000001_040 0.1557399798 - - unnamed protein product [Coffea canephora]
11 Hb_152554_010 0.160579299 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
12 Hb_166480_010 0.1609481708 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
13 Hb_002784_070 0.1639476856 - - BnaUnng01470D [Brassica napus]
14 Hb_013691_030 0.1705739403 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
15 Hb_032927_010 0.1707237088 - - -
16 Hb_010565_040 0.1757770874 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
17 Hb_000136_180 0.1762183319 - - ribosomal protein S28, putative [Ricinus communis]
18 Hb_000007_460 0.1763311965 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
19 Hb_106005_010 0.1785244863 - - EG5651 [Manihot esculenta]
20 Hb_177103_010 0.1797949699 - - PREDICTED: histone H2AX [Elaeis guineensis]

Gene co-expression network

sample Hb_116632_010 Hb_116632_010 Hb_007188_020 Hb_007188_020 Hb_116632_010--Hb_007188_020 Hb_068014_010 Hb_068014_010 Hb_116632_010--Hb_068014_010 Hb_003581_010 Hb_003581_010 Hb_116632_010--Hb_003581_010 Hb_005085_030 Hb_005085_030 Hb_116632_010--Hb_005085_030 Hb_000265_130 Hb_000265_130 Hb_116632_010--Hb_000265_130 Hb_017462_010 Hb_017462_010 Hb_116632_010--Hb_017462_010 Hb_152554_010 Hb_152554_010 Hb_007188_020--Hb_152554_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_000001_040 Hb_000001_040 Hb_007188_020--Hb_000001_040 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040 Hb_007188_020--Hb_005085_030 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_005679_070 Hb_005679_070 Hb_068014_010--Hb_005679_070 Hb_006663_090 Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_106415_010 Hb_106415_010 Hb_068014_010--Hb_106415_010 Hb_003581_010--Hb_000001_040 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_003581_010--Hb_000265_130 Hb_128998_010 Hb_128998_010 Hb_003581_010--Hb_128998_010 Hb_000007_460 Hb_000007_460 Hb_003581_010--Hb_000007_460 Hb_005085_030--Hb_005679_070 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_005085_030--Hb_152554_010 Hb_005085_030--Hb_006663_090 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010 Hb_000265_130--Hb_000001_040 Hb_000261_360 Hb_000261_360 Hb_000265_130--Hb_000261_360 Hb_010504_030 Hb_010504_030 Hb_000265_130--Hb_010504_030 Hb_000176_120 Hb_000176_120 Hb_000265_130--Hb_000176_120 Hb_000265_130--Hb_007188_020 Hb_015026_150 Hb_015026_150 Hb_017462_010--Hb_015026_150 Hb_002784_070 Hb_002784_070 Hb_017462_010--Hb_002784_070 Hb_017462_010--Hb_007188_020 Hb_007484_040 Hb_007484_040 Hb_017462_010--Hb_007484_040 Hb_014834_040 Hb_014834_040 Hb_017462_010--Hb_014834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
956.805 387.024 604.171 3559.67 396.418 10528.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2026.06 2540.25 989.255 2338.29 158.817

CAGE analysis