Hb_007484_040

Information

Type -
Description -
Location Contig7484: 69550-69902
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007484_040 0.0 - - -
2 Hb_116632_010 0.151801165 - - unnamed protein product [Vitis vinifera]
3 Hb_003581_010 0.1641801213 - - hypothetical protein VITISV_004687 [Vitis vinifera]
4 Hb_168737_010 0.1840682139 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001427_060 0.1872428247 - - -
6 Hb_000265_130 0.1882011616 - - -
7 Hb_013691_030 0.1929839492 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
8 Hb_017462_010 0.1969622205 - - -
9 Hb_007188_020 0.2012036492 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
10 Hb_032927_010 0.2046512554 - - -
11 Hb_032225_020 0.2051287387 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
12 Hb_000001_040 0.207117724 - - unnamed protein product [Coffea canephora]
13 Hb_075964_010 0.2147730644 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
14 Hb_073559_010 0.2267754939 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
15 Hb_000608_180 0.230331027 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
16 Hb_000007_460 0.2319338098 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
17 Hb_106005_010 0.2324496716 - - EG5651 [Manihot esculenta]
18 Hb_010565_040 0.2334682845 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
19 Hb_015026_150 0.2343456292 - - Nuclease PA3, putative [Ricinus communis]
20 Hb_005085_030 0.23459889 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007484_040 Hb_007484_040 Hb_116632_010 Hb_116632_010 Hb_007484_040--Hb_116632_010 Hb_003581_010 Hb_003581_010 Hb_007484_040--Hb_003581_010 Hb_168737_010 Hb_168737_010 Hb_007484_040--Hb_168737_010 Hb_001427_060 Hb_001427_060 Hb_007484_040--Hb_001427_060 Hb_000265_130 Hb_000265_130 Hb_007484_040--Hb_000265_130 Hb_013691_030 Hb_013691_030 Hb_007484_040--Hb_013691_030 Hb_007188_020 Hb_007188_020 Hb_116632_010--Hb_007188_020 Hb_068014_010 Hb_068014_010 Hb_116632_010--Hb_068014_010 Hb_116632_010--Hb_003581_010 Hb_005085_030 Hb_005085_030 Hb_116632_010--Hb_005085_030 Hb_116632_010--Hb_000265_130 Hb_017462_010 Hb_017462_010 Hb_116632_010--Hb_017462_010 Hb_000001_040 Hb_000001_040 Hb_003581_010--Hb_000001_040 Hb_003581_010--Hb_168737_010 Hb_003581_010--Hb_000265_130 Hb_128998_010 Hb_128998_010 Hb_003581_010--Hb_128998_010 Hb_000007_460 Hb_000007_460 Hb_003581_010--Hb_000007_460 Hb_073559_010 Hb_073559_010 Hb_168737_010--Hb_073559_010 Hb_032225_020 Hb_032225_020 Hb_168737_010--Hb_032225_020 Hb_005731_140 Hb_005731_140 Hb_168737_010--Hb_005731_140 Hb_168737_010--Hb_000265_130 Hb_000832_240 Hb_000832_240 Hb_168737_010--Hb_000832_240 Hb_075964_010 Hb_075964_010 Hb_001427_060--Hb_075964_010 Hb_001427_060--Hb_000007_460 Hb_001427_060--Hb_003581_010 Hb_001427_060--Hb_068014_010 Hb_001427_060--Hb_013691_030 Hb_000265_130--Hb_000001_040 Hb_000261_360 Hb_000261_360 Hb_000265_130--Hb_000261_360 Hb_010504_030 Hb_010504_030 Hb_000265_130--Hb_010504_030 Hb_000176_120 Hb_000176_120 Hb_000265_130--Hb_000176_120 Hb_000265_130--Hb_007188_020 Hb_013691_030--Hb_000007_460 Hb_013691_030--Hb_010504_030 Hb_013691_030--Hb_003581_010 Hb_013691_030--Hb_007188_020 Hb_013691_030--Hb_128998_010 Hb_013691_030--Hb_116632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.889475 1.33306 0.839602 2.20627 0.316861 13.6791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68095 3.18893 0.827368 3.76413 0

CAGE analysis