Hb_017462_010

Information

Type -
Description -
Location Contig17462: 10455-12114
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017462_010 0.0 - - -
2 Hb_116632_010 0.1496353612 - - unnamed protein product [Vitis vinifera]
3 Hb_015026_150 0.1817101013 - - Nuclease PA3, putative [Ricinus communis]
4 Hb_002784_070 0.1829398559 - - BnaUnng01470D [Brassica napus]
5 Hb_007188_020 0.1953753509 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
6 Hb_007484_040 0.1969622205 - - -
7 Hb_014834_040 0.2027133031 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
8 Hb_098852_010 0.2096632282 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
9 Hb_005085_030 0.2261710526 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
10 Hb_152554_010 0.2267917346 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
11 Hb_021596_080 0.2269865241 - - 50S ribosomal protein L33A [Hevea brasiliensis]
12 Hb_011214_100 0.2275664412 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
13 Hb_038237_010 0.2281518963 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
14 Hb_000265_130 0.2283948303 - - -
15 Hb_032927_010 0.2292412831 - - -
16 Hb_001427_060 0.2308012592 - - -
17 Hb_000136_180 0.2310119255 - - ribosomal protein S28, putative [Ricinus communis]
18 Hb_013818_050 0.233842779 - - PREDICTED: uncharacterized protein LOC105629143 isoform X2 [Jatropha curcas]
19 Hb_010565_040 0.2354358417 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
20 Hb_068014_010 0.2369085711 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_017462_010 Hb_017462_010 Hb_116632_010 Hb_116632_010 Hb_017462_010--Hb_116632_010 Hb_015026_150 Hb_015026_150 Hb_017462_010--Hb_015026_150 Hb_002784_070 Hb_002784_070 Hb_017462_010--Hb_002784_070 Hb_007188_020 Hb_007188_020 Hb_017462_010--Hb_007188_020 Hb_007484_040 Hb_007484_040 Hb_017462_010--Hb_007484_040 Hb_014834_040 Hb_014834_040 Hb_017462_010--Hb_014834_040 Hb_116632_010--Hb_007188_020 Hb_068014_010 Hb_068014_010 Hb_116632_010--Hb_068014_010 Hb_003581_010 Hb_003581_010 Hb_116632_010--Hb_003581_010 Hb_005085_030 Hb_005085_030 Hb_116632_010--Hb_005085_030 Hb_000265_130 Hb_000265_130 Hb_116632_010--Hb_000265_130 Hb_015026_150--Hb_116632_010 Hb_014050_010 Hb_014050_010 Hb_015026_150--Hb_014050_010 Hb_001517_030 Hb_001517_030 Hb_015026_150--Hb_001517_030 Hb_015026_150--Hb_002784_070 Hb_006065_040 Hb_006065_040 Hb_015026_150--Hb_006065_040 Hb_011214_100 Hb_011214_100 Hb_002784_070--Hb_011214_100 Hb_002784_070--Hb_005085_030 Hb_001396_250 Hb_001396_250 Hb_002784_070--Hb_001396_250 Hb_000015_070 Hb_000015_070 Hb_002784_070--Hb_000015_070 Hb_166480_010 Hb_166480_010 Hb_002784_070--Hb_166480_010 Hb_002784_070--Hb_007188_020 Hb_152554_010 Hb_152554_010 Hb_007188_020--Hb_152554_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_000001_040 Hb_000001_040 Hb_007188_020--Hb_000001_040 Hb_000812_040 Hb_000812_040 Hb_007188_020--Hb_000812_040 Hb_007188_020--Hb_005085_030 Hb_007484_040--Hb_116632_010 Hb_007484_040--Hb_003581_010 Hb_168737_010 Hb_168737_010 Hb_007484_040--Hb_168737_010 Hb_001427_060 Hb_001427_060 Hb_007484_040--Hb_001427_060 Hb_007484_040--Hb_000265_130 Hb_013691_030 Hb_013691_030 Hb_007484_040--Hb_013691_030 Hb_001571_110 Hb_001571_110 Hb_014834_040--Hb_001571_110 Hb_042710_010 Hb_042710_010 Hb_014834_040--Hb_042710_010 Hb_098852_010 Hb_098852_010 Hb_014834_040--Hb_098852_010 Hb_132180_010 Hb_132180_010 Hb_014834_040--Hb_132180_010 Hb_020035_020 Hb_020035_020 Hb_014834_040--Hb_020035_020 Hb_006995_040 Hb_006995_040 Hb_014834_040--Hb_006995_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.43632 3.31327 2.13219 40.992 3.39919 89.4079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8725 35.7555 10.0019 49.5413 1.0802

CAGE analysis