Hb_014050_010

Information

Type -
Description -
Location Contig14050: 74-244
Sequence    

Annotation

kegg
ID pda:103700695
description histone H3.3-like
nr
ID XP_008780809.1
description PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
swissprot
ID P06353
description Histone H3.3 (Fragment) OS=Hordeum vulgare PE=2 SV=1
trembl
ID M4CVG3
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra008210 PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014050_010 0.0 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
2 Hb_001396_250 0.1318904208 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
3 Hb_000015_070 0.1722288755 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
4 Hb_010368_030 0.1724821024 - - BnaA07g35570D [Brassica napus]
5 Hb_002482_060 0.1746088744 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
6 Hb_000120_190 0.1750175137 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
7 Hb_000086_190 0.1779232607 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
8 Hb_011214_100 0.1806453065 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
9 Hb_166480_010 0.1870946027 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
10 Hb_007188_020 0.1896447544 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
11 Hb_029142_020 0.1931284905 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
12 Hb_012675_080 0.1965613386 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
13 Hb_175976_010 0.1980547765 - - -
14 Hb_007763_050 0.1982767384 - - hypothetical protein L484_012752 [Morus notabilis]
15 Hb_030982_020 0.1992465735 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
16 Hb_007534_020 0.1993562365 - - -
17 Hb_025288_010 0.2076630749 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
18 Hb_075745_010 0.2077003511 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
19 Hb_000127_090 0.208745689 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003371_170 0.2090106846 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_014050_010 Hb_014050_010 Hb_001396_250 Hb_001396_250 Hb_014050_010--Hb_001396_250 Hb_000015_070 Hb_000015_070 Hb_014050_010--Hb_000015_070 Hb_010368_030 Hb_010368_030 Hb_014050_010--Hb_010368_030 Hb_002482_060 Hb_002482_060 Hb_014050_010--Hb_002482_060 Hb_000120_190 Hb_000120_190 Hb_014050_010--Hb_000120_190 Hb_000086_190 Hb_000086_190 Hb_014050_010--Hb_000086_190 Hb_001396_250--Hb_000015_070 Hb_011214_100 Hb_011214_100 Hb_001396_250--Hb_011214_100 Hb_166480_010 Hb_166480_010 Hb_001396_250--Hb_166480_010 Hb_012675_080 Hb_012675_080 Hb_001396_250--Hb_012675_080 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_000015_070--Hb_166480_010 Hb_000015_070--Hb_011214_100 Hb_000015_070--Hb_012675_080 Hb_175976_010 Hb_175976_010 Hb_010368_030--Hb_175976_010 Hb_010368_030--Hb_000086_190 Hb_010368_030--Hb_000120_190 Hb_007534_020 Hb_007534_020 Hb_010368_030--Hb_007534_020 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_010368_030--Hb_166480_010 Hb_002482_060--Hb_000120_190 Hb_005731_140 Hb_005731_140 Hb_002482_060--Hb_005731_140 Hb_002482_060--Hb_166480_010 Hb_006198_090 Hb_006198_090 Hb_002482_060--Hb_006198_090 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_000120_190--Hb_175976_010 Hb_000120_190--Hb_166480_010 Hb_029142_020 Hb_029142_020 Hb_000120_190--Hb_029142_020 Hb_000120_190--Hb_006198_090 Hb_000668_020 Hb_000668_020 Hb_000086_190--Hb_000668_020 Hb_000086_190--Hb_012675_080 Hb_000289_080 Hb_000289_080 Hb_000086_190--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_000086_190--Hb_006995_010 Hb_000086_190--Hb_001396_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7639 100.511 65.5425 613.709 8.57789 1088.68
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
240.248 504.735 254.086 86.8971 25.1222

CAGE analysis