Hb_012675_080

Information

Type -
Description -
Location Contig12675: 52163-54361
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_476769
description hypothetical protein
nr
ID XP_011022264.1
description PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID K4CMH6
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g074580.2 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cytoplasmic trna 2-thiolation protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012675_080 0.0 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
2 Hb_003656_150 0.1145235248 - - -
3 Hb_000015_070 0.1279638258 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
4 Hb_000086_190 0.1282291829 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
5 Hb_001396_250 0.1289622674 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
6 Hb_006995_010 0.1325496977 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
7 Hb_011037_020 0.1467757169 - - unknown [Picea sitchensis]
8 Hb_005107_020 0.1473870782 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
9 Hb_108227_010 0.1490546552 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
10 Hb_000789_150 0.1514236991 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
11 Hb_007763_050 0.1522171791 - - hypothetical protein L484_012752 [Morus notabilis]
12 Hb_166480_010 0.1590628921 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
13 Hb_000668_020 0.1618636284 - - -
14 Hb_000289_080 0.1633781581 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002079_040 0.1699916564 - - hypothetical protein VITISV_018542 [Vitis vinifera]
16 Hb_000034_090 0.1706392797 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
17 Hb_011214_100 0.1715719114 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
18 Hb_010368_030 0.1749714813 - - BnaA07g35570D [Brassica napus]
19 Hb_011200_010 0.1756876736 - - -
20 Hb_002784_070 0.1789318431 - - BnaUnng01470D [Brassica napus]

Gene co-expression network

sample Hb_012675_080 Hb_012675_080 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_003656_150--Hb_006995_010 Hb_007188_030 Hb_007188_030 Hb_003656_150--Hb_007188_030 Hb_006198_090 Hb_006198_090 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_000015_070--Hb_001396_250 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_000668_020 Hb_000668_020 Hb_000086_190--Hb_000668_020 Hb_010368_030 Hb_010368_030 Hb_000086_190--Hb_010368_030 Hb_000289_080 Hb_000289_080 Hb_000086_190--Hb_000289_080 Hb_000086_190--Hb_006995_010 Hb_000086_190--Hb_001396_250 Hb_001396_250--Hb_011214_100 Hb_001396_250--Hb_166480_010 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070 Hb_006995_010--Hb_000289_080 Hb_006995_010--Hb_003029_100 Hb_006995_010--Hb_006198_090 Hb_025288_010 Hb_025288_010 Hb_011037_020--Hb_025288_010 Hb_000671_120 Hb_000671_120 Hb_011037_020--Hb_000671_120 Hb_011037_020--Hb_011214_100 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75858 2.06363 2.43218 85.7035 3.84586 95.8491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5017 26.6216 8.13015 8.01275 3.25047

CAGE analysis