Hb_003371_170

Information

Type -
Description -
Location Contig3371: 106833-107208
Sequence    

Annotation

kegg
ID rcu:RCOM_1771090
description hypothetical protein
nr
ID XP_002512150.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REI1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1771090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35297: 102981-108291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000015_070 0.1117949817 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
3 Hb_006663_090 0.1263055852 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
4 Hb_106415_010 0.1376138902 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
5 Hb_108227_010 0.1409836252 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
6 Hb_076875_020 0.1433338793 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
7 Hb_068014_010 0.1454540581 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
8 Hb_007083_020 0.1462084419 - - hypothetical protein F775_15403 [Aegilops tauschii]
9 Hb_019053_010 0.1487285226 - - -
10 Hb_001623_290 0.1488048234 - - unknown [Populus trichocarpa]
11 Hb_002192_090 0.1502664331 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
12 Hb_001623_300 0.1514832023 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
13 Hb_112047_010 0.1535462397 - - -
14 Hb_089202_010 0.1568734727 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
15 Hb_007188_020 0.1572353961 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
16 Hb_128998_010 0.159440687 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
17 Hb_000136_180 0.164209146 - - ribosomal protein S28, putative [Ricinus communis]
18 Hb_000342_160 0.1650583857 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
19 Hb_001396_250 0.1652269957 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
20 Hb_000825_030 0.1662032765 - - zinc binding dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003371_170 Hb_003371_170 Hb_000015_070 Hb_000015_070 Hb_003371_170--Hb_000015_070 Hb_006663_090 Hb_006663_090 Hb_003371_170--Hb_006663_090 Hb_106415_010 Hb_106415_010 Hb_003371_170--Hb_106415_010 Hb_108227_010 Hb_108227_010 Hb_003371_170--Hb_108227_010 Hb_076875_020 Hb_076875_020 Hb_003371_170--Hb_076875_020 Hb_068014_010 Hb_068014_010 Hb_003371_170--Hb_068014_010 Hb_001396_250 Hb_001396_250 Hb_000015_070--Hb_001396_250 Hb_000015_070--Hb_108227_010 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_000015_070--Hb_012675_080 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_006663_090--Hb_068014_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_106415_010--Hb_000825_030 Hb_108227_010--Hb_001396_250 Hb_108227_010--Hb_012675_080 Hb_000789_150 Hb_000789_150 Hb_108227_010--Hb_000789_150 Hb_013394_100 Hb_013394_100 Hb_108227_010--Hb_013394_100 Hb_010565_010 Hb_010565_010 Hb_076875_020--Hb_010565_010 Hb_152554_010 Hb_152554_010 Hb_076875_020--Hb_152554_010 Hb_000812_040 Hb_000812_040 Hb_076875_020--Hb_000812_040 Hb_001135_140 Hb_001135_140 Hb_076875_020--Hb_001135_140 Hb_038237_010 Hb_038237_010 Hb_076875_020--Hb_038237_010 Hb_007188_020 Hb_007188_020 Hb_076875_020--Hb_007188_020 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_068014_010--Hb_005679_070 Hb_068014_010--Hb_007083_020 Hb_068014_010--Hb_019053_010 Hb_068014_010--Hb_106415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.71877 3.23016 1.61062 17.5719 2.86037 23.5108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2856 5.74991 4.10953 2.93149 1.33939

CAGE analysis