Hb_000825_030

Information

Type -
Description -
Location Contig825: 52562-57744
Sequence    

Annotation

kegg
ID rcu:RCOM_0482300
description zinc binding dehydrogenase, putative
nr
ID XP_002527341.1
description zinc binding dehydrogenase, putative [Ricinus communis]
swissprot
ID Q4PJX1
description Protein odr-4 homolog OS=Mus musculus GN=Odr4 PE=2 SV=2
trembl
ID B9SMX2
description Zinc binding dehydrogenase, putative OS=Ricinus communis GN=RCOM_0482300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59692: 56007-56233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000825_030 0.0 - - zinc binding dehydrogenase, putative [Ricinus communis]
2 Hb_006663_090 0.10901088 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
3 Hb_038237_010 0.1254674703 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
4 Hb_006487_060 0.12859841 - - Defective in cullin neddylation protein, putative [Ricinus communis]
5 Hb_106415_010 0.1304176914 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
6 Hb_000991_070 0.1325207482 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
7 Hb_152554_010 0.1372318023 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
8 Hb_150023_010 0.1402067299 - - 50S ribosomal protein L2, putative [Ricinus communis]
9 Hb_000074_060 0.1404056804 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
10 Hb_168973_010 0.143381968 - - -
11 Hb_005023_030 0.1447429302 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
12 Hb_001386_140 0.1451886615 - - PREDICTED: B2 protein [Jatropha curcas]
13 Hb_115477_010 0.1462696245 - - Protein dom-3, putative [Ricinus communis]
14 Hb_002974_050 0.1473007222 - - -
15 Hb_004466_060 0.1485490224 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
16 Hb_001135_140 0.1488153127 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
17 Hb_010565_010 0.149039535 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
18 Hb_000053_030 0.1499830196 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
19 Hb_002687_080 0.1514864838 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
20 Hb_115107_010 0.1528289065 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000825_030 Hb_000825_030 Hb_006663_090 Hb_006663_090 Hb_000825_030--Hb_006663_090 Hb_038237_010 Hb_038237_010 Hb_000825_030--Hb_038237_010 Hb_006487_060 Hb_006487_060 Hb_000825_030--Hb_006487_060 Hb_106415_010 Hb_106415_010 Hb_000825_030--Hb_106415_010 Hb_000991_070 Hb_000991_070 Hb_000825_030--Hb_000991_070 Hb_152554_010 Hb_152554_010 Hb_000825_030--Hb_152554_010 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_006663_090--Hb_006487_060 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_038237_010--Hb_152554_010 Hb_076875_020 Hb_076875_020 Hb_038237_010--Hb_076875_020 Hb_129672_010 Hb_129672_010 Hb_038237_010--Hb_129672_010 Hb_005527_020 Hb_005527_020 Hb_038237_010--Hb_005527_020 Hb_000676_080 Hb_000676_080 Hb_038237_010--Hb_000676_080 Hb_006487_060--Hb_152554_010 Hb_007763_060 Hb_007763_060 Hb_006487_060--Hb_007763_060 Hb_000176_120 Hb_000176_120 Hb_006487_060--Hb_000176_120 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_002067_120 Hb_002067_120 Hb_000991_070--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_000991_070--Hb_010565_010 Hb_002974_050 Hb_002974_050 Hb_000991_070--Hb_002974_050 Hb_000107_200 Hb_000107_200 Hb_000991_070--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_000991_070--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_000991_070--Hb_000606_080 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_000812_040 Hb_000812_040 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_152554_010--Hb_000176_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0441 4.74996 5.23225 37.1664 11.2283 46.2985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5829 8.59297 7.88437 9.83868 7.34147

CAGE analysis