Hb_038237_010

Information

Type -
Description -
Location Contig38237: 1108-1467
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01110g
description hypothetical protein
nr
ID XP_002303162.2
description hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
swissprot
ID Q9C958
description Serine/threonine-protein kinase SRK2B OS=Arabidopsis thaliana GN=SRK2B PE=1 SV=1
trembl
ID B9GZG8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01110g PE=4 SV=2
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase srk2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038237_010 0.0 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
2 Hb_152554_010 0.1253053079 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
3 Hb_000825_030 0.1254674703 - - zinc binding dehydrogenase, putative [Ricinus communis]
4 Hb_076875_020 0.1277203849 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
5 Hb_129672_010 0.1291994 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
6 Hb_005527_020 0.1328068574 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
7 Hb_000676_080 0.1363228208 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
8 Hb_003940_040 0.1370900102 - - conserved hypothetical protein [Ricinus communis]
9 Hb_115107_010 0.1389538382 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
10 Hb_001135_140 0.1405757228 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
11 Hb_002687_080 0.1409363774 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
12 Hb_006636_010 0.1415012242 - - PREDICTED: uncharacterized protein LOC105637987 [Jatropha curcas]
13 Hb_099878_030 0.1424866799 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
14 Hb_000074_060 0.1451003331 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
15 Hb_028420_020 0.1453695138 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
16 Hb_099878_050 0.1477777163 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
17 Hb_000392_190 0.1491509917 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
18 Hb_000215_310 0.1499114099 - - -
19 Hb_021238_050 0.1517995366 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001250_060 0.1530317872 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]

Gene co-expression network

sample Hb_038237_010 Hb_038237_010 Hb_152554_010 Hb_152554_010 Hb_038237_010--Hb_152554_010 Hb_000825_030 Hb_000825_030 Hb_038237_010--Hb_000825_030 Hb_076875_020 Hb_076875_020 Hb_038237_010--Hb_076875_020 Hb_129672_010 Hb_129672_010 Hb_038237_010--Hb_129672_010 Hb_005527_020 Hb_005527_020 Hb_038237_010--Hb_005527_020 Hb_000676_080 Hb_000676_080 Hb_038237_010--Hb_000676_080 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_006487_060 Hb_006487_060 Hb_152554_010--Hb_006487_060 Hb_000812_040 Hb_000812_040 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_000176_120 Hb_000176_120 Hb_152554_010--Hb_000176_120 Hb_006663_090 Hb_006663_090 Hb_000825_030--Hb_006663_090 Hb_000825_030--Hb_006487_060 Hb_106415_010 Hb_106415_010 Hb_000825_030--Hb_106415_010 Hb_000991_070 Hb_000991_070 Hb_000825_030--Hb_000991_070 Hb_000825_030--Hb_152554_010 Hb_010565_010 Hb_010565_010 Hb_076875_020--Hb_010565_010 Hb_076875_020--Hb_152554_010 Hb_076875_020--Hb_000812_040 Hb_001135_140 Hb_001135_140 Hb_076875_020--Hb_001135_140 Hb_076875_020--Hb_007188_020 Hb_001250_060 Hb_001250_060 Hb_129672_010--Hb_001250_060 Hb_129672_010--Hb_000676_080 Hb_000635_070 Hb_000635_070 Hb_129672_010--Hb_000635_070 Hb_009270_030 Hb_009270_030 Hb_129672_010--Hb_009270_030 Hb_082006_010 Hb_082006_010 Hb_129672_010--Hb_082006_010 Hb_086085_020 Hb_086085_020 Hb_129672_010--Hb_086085_020 Hb_005527_020--Hb_000676_080 Hb_001014_110 Hb_001014_110 Hb_005527_020--Hb_001014_110 Hb_004157_100 Hb_004157_100 Hb_005527_020--Hb_004157_100 Hb_005527_020--Hb_001250_060 Hb_000004_020 Hb_000004_020 Hb_005527_020--Hb_000004_020 Hb_054745_010 Hb_054745_010 Hb_005527_020--Hb_054745_010 Hb_000676_080--Hb_054745_010 Hb_000676_080--Hb_004157_100 Hb_000676_080--Hb_001250_060 Hb_002271_020 Hb_002271_020 Hb_000676_080--Hb_002271_020 Hb_000453_160 Hb_000453_160 Hb_000676_080--Hb_000453_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.2868 44.5134 30.0433 202.868 59.3002 261.733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.932 91.6987 49.864 135.451 35.6253

CAGE analysis