Hb_009270_030

Information

Type -
Description -
Location Contig9270: 82823-83098
Sequence    

Annotation

kegg
ID rcu:RCOM_0803250
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_002516581.1
description Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
swissprot
ID Q0JEP3
description BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2
trembl
ID B9RS62
description Dehydration-responsive protein RD22, putative OS=Ricinus communis GN=RCOM_0803250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009270_030 0.0 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
2 Hb_000635_070 0.0853359377 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
3 Hb_082006_010 0.0980861254 - - conserved hypothetical protein [Ricinus communis]
4 Hb_129672_010 0.1059762994 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
5 Hb_002562_110 0.1304630949 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
6 Hb_030982_020 0.134075251 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
7 Hb_011214_100 0.1363347227 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
8 Hb_004709_020 0.1380755861 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
9 Hb_002078_260 0.13961364 - - unknown [Populus trichocarpa]
10 Hb_132180_010 0.1433431816 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
11 Hb_000340_520 0.1452847945 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
12 Hb_098852_010 0.147477812 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
13 Hb_001747_030 0.1488722409 - - hypothetical protein F383_08210 [Gossypium arboreum]
14 Hb_016604_030 0.1491659147 - - histone H4 [Zea mays]
15 Hb_004669_030 0.1491796653 - - -
16 Hb_041205_010 0.1531833142 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005694_020 0.1544644253 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
18 Hb_001250_060 0.1554933552 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
19 Hb_000074_060 0.1556591325 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
20 Hb_000125_010 0.1598110051 transcription factor TF Family: mTERF -

Gene co-expression network

sample Hb_009270_030 Hb_009270_030 Hb_000635_070 Hb_000635_070 Hb_009270_030--Hb_000635_070 Hb_082006_010 Hb_082006_010 Hb_009270_030--Hb_082006_010 Hb_129672_010 Hb_129672_010 Hb_009270_030--Hb_129672_010 Hb_002562_110 Hb_002562_110 Hb_009270_030--Hb_002562_110 Hb_030982_020 Hb_030982_020 Hb_009270_030--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_009270_030--Hb_011214_100 Hb_000635_070--Hb_082006_010 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_004669_030 Hb_004669_030 Hb_000635_070--Hb_004669_030 Hb_000635_070--Hb_129672_010 Hb_000635_070--Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_002078_260 Hb_002078_260 Hb_082006_010--Hb_002078_260 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_001250_060 Hb_001250_060 Hb_129672_010--Hb_001250_060 Hb_000676_080 Hb_000676_080 Hb_129672_010--Hb_000676_080 Hb_086085_020 Hb_086085_020 Hb_129672_010--Hb_086085_020 Hb_002562_110--Hb_002078_260 Hb_002562_110--Hb_004669_030 Hb_000016_060 Hb_000016_060 Hb_002562_110--Hb_000016_060 Hb_030982_020--Hb_002078_260 Hb_030982_020--Hb_011214_100 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_030982_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_030982_020--Hb_132180_010 Hb_001396_250 Hb_001396_250 Hb_011214_100--Hb_001396_250 Hb_011214_100--Hb_132180_010 Hb_011214_100--Hb_002078_260 Hb_000015_070 Hb_000015_070 Hb_011214_100--Hb_000015_070 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.964017 1.20785 4.14651 15.7006 2.54776 13.999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.06822 8.1095 5.00093 5.67661 2.1604

CAGE analysis