Hb_030982_020

Information

Type -
Description -
Location Contig30982: 17454-22581
Sequence    

Annotation

kegg
ID tcc:TCM_032011
description Ubiquitin domain-containing protein
nr
ID XP_012074542.1
description PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q4V8W7
description Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1
trembl
ID A0A067LC19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13482 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32759: 17429-23030 , PASA_asmbl_32760: 19007-19165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030982_020 0.0 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
2 Hb_002078_260 0.0919555006 - - unknown [Populus trichocarpa]
3 Hb_011214_100 0.1142670177 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
4 Hb_098852_010 0.1220831039 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
5 Hb_041205_010 0.1284616302 - - conserved hypothetical protein [Ricinus communis]
6 Hb_132180_010 0.1291776532 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_009270_030 0.134075251 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
8 Hb_082006_010 0.1353758538 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000340_520 0.1378372164 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
10 Hb_076175_010 0.1391206782 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
11 Hb_007894_230 0.1421616568 - - 30S ribosomal protein S14, putative [Ricinus communis]
12 Hb_025288_010 0.1458637471 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
13 Hb_000635_070 0.1462884454 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
14 Hb_003352_040 0.1502521416 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
15 Hb_005694_020 0.15037944 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
16 Hb_011512_050 0.1539552111 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
17 Hb_002259_160 0.1560560287 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
18 Hb_029142_020 0.1583480481 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
19 Hb_002482_040 0.1616851474 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
20 Hb_080601_020 0.1622111976 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]

Gene co-expression network

sample Hb_030982_020 Hb_030982_020 Hb_002078_260 Hb_002078_260 Hb_030982_020--Hb_002078_260 Hb_011214_100 Hb_011214_100 Hb_030982_020--Hb_011214_100 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_041205_010 Hb_041205_010 Hb_030982_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_030982_020--Hb_132180_010 Hb_009270_030 Hb_009270_030 Hb_030982_020--Hb_009270_030 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_001396_250 Hb_001396_250 Hb_011214_100--Hb_001396_250 Hb_011214_100--Hb_132180_010 Hb_011214_100--Hb_002078_260 Hb_000015_070 Hb_000015_070 Hb_011214_100--Hb_000015_070 Hb_000342_160 Hb_000342_160 Hb_011214_100--Hb_000342_160 Hb_098852_010--Hb_041205_010 Hb_098852_010--Hb_132180_010 Hb_098852_010--Hb_002078_260 Hb_003861_040 Hb_003861_040 Hb_098852_010--Hb_003861_040 Hb_000326_090 Hb_000326_090 Hb_098852_010--Hb_000326_090 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_041205_010--Hb_082006_010 Hb_041205_010--Hb_002078_260 Hb_000641_020 Hb_000641_020 Hb_041205_010--Hb_000641_020 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_001220_010 Hb_001220_010 Hb_132180_010--Hb_001220_010 Hb_009270_030--Hb_000635_070 Hb_009270_030--Hb_082006_010 Hb_129672_010 Hb_129672_010 Hb_009270_030--Hb_129672_010 Hb_002562_110 Hb_002562_110 Hb_009270_030--Hb_002562_110 Hb_009270_030--Hb_011214_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3268 1.33893 4.44779 33.7814 1.93499 37.1789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8923 23.0934 19.5491 12.817 5.53527

CAGE analysis