Hb_001220_010

Information

Type -
Description -
Location Contig1220: 8560-12171
Sequence    

Annotation

kegg
ID pmum:103342902
description macrophage migration inhibitory factor homolog
nr
ID KDP22824.1
description hypothetical protein JCGZ_00411 [Jatropha curcas]
swissprot
ID P81748
description Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2
trembl
ID A0A067JTG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00411 PE=4 SV=1
Gene Ontology
ID GO:0009507
description macrophage migration inhibitory factor homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06678: 8495-11588 , PASA_asmbl_06679: 9232-9448 , PASA_asmbl_06680: 10145-10515 , PASA_asmbl_06681: 9920-10077
cDNA
(Sanger)
(ID:Location)		 027_L20.ab1: 8526-11546 , 031_D20.ab1: 8537-11499

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001220_010 0.0 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
2 Hb_080601_020 0.0867003529 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
3 Hb_001233_020 0.1018094824 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
4 Hb_132180_010 0.1157663817 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
5 Hb_000671_120 0.1161939518 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
6 Hb_004669_030 0.1168764332 - - -
7 Hb_007894_230 0.1186930081 - - 30S ribosomal protein S14, putative [Ricinus communis]
8 Hb_001163_040 0.1298889061 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
9 Hb_002078_260 0.1301825622 - - unknown [Populus trichocarpa]
10 Hb_000635_070 0.1358528945 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
11 Hb_182964_010 0.137987774 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
12 Hb_000710_070 0.1383074016 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
13 Hb_016604_030 0.1430171558 - - histone H4 [Zea mays]
14 Hb_001754_070 0.1489646318 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
15 Hb_029142_070 0.1511785509 - - -
16 Hb_006995_040 0.1514786219 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
17 Hb_082006_010 0.1525614951 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011214_100 0.1544552404 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
19 Hb_000342_160 0.1550006756 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
20 Hb_000994_110 0.1553079887 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001220_010 Hb_001220_010 Hb_080601_020 Hb_080601_020 Hb_001220_010--Hb_080601_020 Hb_001233_020 Hb_001233_020 Hb_001220_010--Hb_001233_020 Hb_132180_010 Hb_132180_010 Hb_001220_010--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_001220_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_001220_010--Hb_004669_030 Hb_007894_230 Hb_007894_230 Hb_001220_010--Hb_007894_230 Hb_080601_020--Hb_007894_230 Hb_000710_070 Hb_000710_070 Hb_080601_020--Hb_000710_070 Hb_002078_260 Hb_002078_260 Hb_080601_020--Hb_002078_260 Hb_016604_030 Hb_016604_030 Hb_080601_020--Hb_016604_030 Hb_001163_040 Hb_001163_040 Hb_080601_020--Hb_001163_040 Hb_001233_020--Hb_132180_010 Hb_001233_020--Hb_004669_030 Hb_001233_020--Hb_000671_120 Hb_001233_020--Hb_080601_020 Hb_000994_110 Hb_000994_110 Hb_001233_020--Hb_000994_110 Hb_132180_010--Hb_002078_260 Hb_132180_010--Hb_000671_120 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_000671_120--Hb_004669_030 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_011037_020 Hb_011037_020 Hb_000671_120--Hb_011037_020 Hb_004669_030--Hb_000635_070 Hb_002562_110 Hb_002562_110 Hb_004669_030--Hb_002562_110 Hb_007894_230--Hb_002078_260 Hb_001935_150 Hb_001935_150 Hb_007894_230--Hb_001935_150 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_005694_020 Hb_005694_020 Hb_007894_230--Hb_005694_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4468 8.3524 22.0473 240.697 25.5954 161.253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.661 203.292 51.7762 26.428 22.289

CAGE analysis