Hb_000710_070

Information

Type -
Description -
Location Contig710: 92634-93040
Sequence    

Annotation

kegg
ID pop:POPTR_0011s15240g
description POPTRDRAFT_1094766; hypothetical protein
nr
ID XP_012086561.1
description PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9I0P7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15240g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55223: 83460-92440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_070 0.0 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
2 Hb_080601_020 0.1172645501 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
3 Hb_002284_050 0.1263942164 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
4 Hb_041205_010 0.1290705092 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000641_020 0.1330592429 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
6 Hb_029142_070 0.1365699727 - - -
7 Hb_001220_010 0.1383074016 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
8 Hb_006995_040 0.1394152581 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
9 Hb_016604_030 0.1415699119 - - histone H4 [Zea mays]
10 Hb_000215_200 0.1415842232 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
11 Hb_082006_010 0.1418344751 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002259_160 0.1429337355 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
13 Hb_007894_230 0.144787562 - - 30S ribosomal protein S14, putative [Ricinus communis]
14 Hb_031089_040 0.1509593 - - thioredoxin H-type 1 [Hevea brasiliensis]
15 Hb_000635_070 0.1517101952 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
16 Hb_001504_080 0.151888876 - - golgi snare 11 protein, putative [Ricinus communis]
17 Hb_182964_010 0.1540084597 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
18 Hb_002078_260 0.1540237297 - - unknown [Populus trichocarpa]
19 Hb_003994_270 0.1548642709 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
20 Hb_000326_090 0.1595668274 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_000710_070 Hb_000710_070 Hb_080601_020 Hb_080601_020 Hb_000710_070--Hb_080601_020 Hb_002284_050 Hb_002284_050 Hb_000710_070--Hb_002284_050 Hb_041205_010 Hb_041205_010 Hb_000710_070--Hb_041205_010 Hb_000641_020 Hb_000641_020 Hb_000710_070--Hb_000641_020 Hb_029142_070 Hb_029142_070 Hb_000710_070--Hb_029142_070 Hb_001220_010 Hb_001220_010 Hb_000710_070--Hb_001220_010 Hb_080601_020--Hb_001220_010 Hb_007894_230 Hb_007894_230 Hb_080601_020--Hb_007894_230 Hb_002078_260 Hb_002078_260 Hb_080601_020--Hb_002078_260 Hb_016604_030 Hb_016604_030 Hb_080601_020--Hb_016604_030 Hb_001163_040 Hb_001163_040 Hb_080601_020--Hb_001163_040 Hb_000215_200 Hb_000215_200 Hb_002284_050--Hb_000215_200 Hb_001504_080 Hb_001504_080 Hb_002284_050--Hb_001504_080 Hb_002284_050--Hb_080601_020 Hb_002660_050 Hb_002660_050 Hb_002284_050--Hb_002660_050 Hb_172706_030 Hb_172706_030 Hb_002284_050--Hb_172706_030 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_041205_010--Hb_000215_200 Hb_082006_010 Hb_082006_010 Hb_041205_010--Hb_082006_010 Hb_041205_010--Hb_002078_260 Hb_041205_010--Hb_000641_020 Hb_000641_020--Hb_000215_200 Hb_003994_270 Hb_003994_270 Hb_000641_020--Hb_003994_270 Hb_000635_070 Hb_000635_070 Hb_000641_020--Hb_000635_070 Hb_000641_020--Hb_029142_070 Hb_029142_070--Hb_041205_010 Hb_029142_070--Hb_002078_260 Hb_005694_020 Hb_005694_020 Hb_029142_070--Hb_005694_020 Hb_132180_010 Hb_132180_010 Hb_029142_070--Hb_132180_010 Hb_029142_070--Hb_007894_230 Hb_001233_020 Hb_001233_020 Hb_001220_010--Hb_001233_020 Hb_001220_010--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_001220_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_001220_010--Hb_004669_030 Hb_001220_010--Hb_007894_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81064 6.60744 6.05777 62.1363 12.3604 65.4577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.656 54.755 23.4955 5.52078 19.0957

CAGE analysis