Hb_000641_020

Information

Type -
Description -
Location Contig641: 22383-24471
Sequence    

Annotation

kegg
ID egr:104425369
description tubulin-folding cofactor B
nr
ID XP_012086001.1
description PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
swissprot
ID Q67Z52
description Tubulin-folding cofactor B OS=Arabidopsis thaliana GN=TFCB PE=1 SV=1
trembl
ID A0A067JQW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22493 PE=4 SV=1
Gene Ontology
ID GO:0044424
description tubulin-folding cofactor b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52168: 22465-25302 , PASA_asmbl_52169: 22446-25302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000641_020 0.0 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
2 Hb_000215_200 0.1142335284 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
3 Hb_003994_270 0.1142472792 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
4 Hb_041205_010 0.1194730901 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000635_070 0.1280222268 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
6 Hb_029142_070 0.1294493187 - - -
7 Hb_000710_070 0.1330592429 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
8 Hb_028420_020 0.1355612433 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
9 Hb_002168_010 0.1377895791 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
10 Hb_066768_010 0.1382223705 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_004669_030 0.13996102 - - -
12 Hb_016604_030 0.1403842744 - - histone H4 [Zea mays]
13 Hb_082006_010 0.1426440328 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002660_050 0.1429009774 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
15 Hb_001377_180 0.1433933302 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
16 Hb_006995_040 0.1453475094 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
17 Hb_004784_020 0.1466617456 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
18 Hb_000326_090 0.1475632303 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
19 Hb_031089_040 0.1480187444 - - thioredoxin H-type 1 [Hevea brasiliensis]
20 Hb_002284_050 0.1486226165 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]

Gene co-expression network

sample Hb_000641_020 Hb_000641_020 Hb_000215_200 Hb_000215_200 Hb_000641_020--Hb_000215_200 Hb_003994_270 Hb_003994_270 Hb_000641_020--Hb_003994_270 Hb_041205_010 Hb_041205_010 Hb_000641_020--Hb_041205_010 Hb_000635_070 Hb_000635_070 Hb_000641_020--Hb_000635_070 Hb_029142_070 Hb_029142_070 Hb_000641_020--Hb_029142_070 Hb_000710_070 Hb_000710_070 Hb_000641_020--Hb_000710_070 Hb_000215_200--Hb_041205_010 Hb_002284_050 Hb_002284_050 Hb_000215_200--Hb_002284_050 Hb_006995_040 Hb_006995_040 Hb_000215_200--Hb_006995_040 Hb_000215_200--Hb_003994_270 Hb_132180_010 Hb_132180_010 Hb_000215_200--Hb_132180_010 Hb_001377_180 Hb_001377_180 Hb_003994_270--Hb_001377_180 Hb_000155_180 Hb_000155_180 Hb_003994_270--Hb_000155_180 Hb_012653_040 Hb_012653_040 Hb_003994_270--Hb_012653_040 Hb_000771_100 Hb_000771_100 Hb_003994_270--Hb_000771_100 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_082006_010 Hb_082006_010 Hb_041205_010--Hb_082006_010 Hb_002078_260 Hb_002078_260 Hb_041205_010--Hb_002078_260 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_004669_030 Hb_004669_030 Hb_000635_070--Hb_004669_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_002562_110 Hb_002562_110 Hb_000635_070--Hb_002562_110 Hb_029142_070--Hb_041205_010 Hb_029142_070--Hb_002078_260 Hb_005694_020 Hb_005694_020 Hb_029142_070--Hb_005694_020 Hb_029142_070--Hb_132180_010 Hb_007894_230 Hb_007894_230 Hb_029142_070--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_000710_070--Hb_080601_020 Hb_000710_070--Hb_002284_050 Hb_000710_070--Hb_041205_010 Hb_000710_070--Hb_029142_070 Hb_001220_010 Hb_001220_010 Hb_000710_070--Hb_001220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.57502 0.669657 1.16745 8.29154 2.44338 7.99537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.97767 5.28435 1.86934 2.33 1.79436

CAGE analysis