Hb_005694_020

Information

Type -
Description -
Location Contig5694: 11025-15262
Sequence    

Annotation

kegg
ID tcc:TCM_005108
description ORMDL family protein
nr
ID XP_012480902.1
description PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
swissprot
ID Q5XJR6
description ORM1-like protein 3 OS=Danio rerio GN=ormdl3 PE=2 SV=1
trembl
ID A0A0D2QQY6
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G153200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49222: 12640-12873 , PASA_asmbl_49223: 13469-13612 , PASA_asmbl_49225: 15242-15470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_020 0.0 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
2 Hb_002078_260 0.0981225686 - - unknown [Populus trichocarpa]
3 Hb_007894_230 0.121953424 - - 30S ribosomal protein S14, putative [Ricinus communis]
4 Hb_082006_010 0.1265762159 - - conserved hypothetical protein [Ricinus communis]
5 Hb_041205_010 0.1266648087 - - conserved hypothetical protein [Ricinus communis]
6 Hb_132180_010 0.1267010275 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_029142_070 0.1279090027 - - -
8 Hb_006153_030 0.1285440067 - - PREDICTED: probable transaldolase [Jatropha curcas]
9 Hb_002562_110 0.1341441001 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
10 Hb_002735_050 0.1389575929 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
11 Hb_098852_010 0.1429134943 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
12 Hb_000635_070 0.147036545 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
13 Hb_007943_200 0.1485564448 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_000016_060 0.1489378664 - - mads box protein, putative [Ricinus communis]
15 Hb_000125_010 0.1498202969 transcription factor TF Family: mTERF -
16 Hb_000125_020 0.149842188 transcription factor TF Family: mTERF -
17 Hb_030982_020 0.15037944 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
18 Hb_000326_090 0.1518119284 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
19 Hb_000340_520 0.1524169196 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
20 Hb_009270_030 0.1544644253 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005694_020 Hb_005694_020 Hb_002078_260 Hb_002078_260 Hb_005694_020--Hb_002078_260 Hb_007894_230 Hb_007894_230 Hb_005694_020--Hb_007894_230 Hb_082006_010 Hb_082006_010 Hb_005694_020--Hb_082006_010 Hb_041205_010 Hb_041205_010 Hb_005694_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_005694_020--Hb_132180_010 Hb_029142_070 Hb_029142_070 Hb_005694_020--Hb_029142_070 Hb_002078_260--Hb_007894_230 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_002078_260--Hb_132180_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_080601_020 Hb_080601_020 Hb_007894_230--Hb_080601_020 Hb_001935_150 Hb_001935_150 Hb_007894_230--Hb_001935_150 Hb_001571_110 Hb_001571_110 Hb_007894_230--Hb_001571_110 Hb_001220_010 Hb_001220_010 Hb_007894_230--Hb_001220_010 Hb_000635_070 Hb_000635_070 Hb_082006_010--Hb_000635_070 Hb_002562_110 Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_009270_030 Hb_009270_030 Hb_082006_010--Hb_009270_030 Hb_129672_010 Hb_129672_010 Hb_082006_010--Hb_129672_010 Hb_082006_010--Hb_041205_010 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_041205_010--Hb_002078_260 Hb_000641_020 Hb_000641_020 Hb_041205_010--Hb_000641_020 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_132180_010--Hb_000635_070 Hb_132180_010--Hb_001220_010 Hb_029142_070--Hb_041205_010 Hb_029142_070--Hb_002078_260 Hb_029142_070--Hb_000641_020 Hb_029142_070--Hb_132180_010 Hb_029142_070--Hb_007894_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.70648 3.84894 2.77785 36.0212 3.37527 22.4966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.27 24.7861 10.9902 16.9393 9.60315

CAGE analysis