Hb_000340_520

Information

Type -
Description -
Location Contig340: 436363-438711
Sequence    

Annotation

kegg
ID rcu:RCOM_0557130
description Cytochrome c oxidase polypeptide Vc, putative
nr
ID XP_012082897.1
description PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
swissprot
ID Q9SXX7
description Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3
trembl
ID A0A067K8Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14030 PE=4 SV=1
Gene Ontology
ID GO:0005751
description cytochrome c oxidase subunit 5c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35592: 436163-438074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_520 0.0 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
2 Hb_002078_260 0.1096829253 - - unknown [Populus trichocarpa]
3 Hb_000635_070 0.1225568245 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
4 Hb_082006_010 0.1299147153 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000125_010 0.1328490223 transcription factor TF Family: mTERF -
6 Hb_000733_080 0.137285079 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
7 Hb_030982_020 0.1378372164 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
8 Hb_003352_040 0.1381010421 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
9 Hb_098852_010 0.1417663048 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
10 Hb_001250_060 0.142774761 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
11 Hb_132180_010 0.1432682572 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
12 Hb_000162_260 0.1432840817 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
13 Hb_002562_110 0.1442854869 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
14 Hb_000326_090 0.144978287 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
15 Hb_009270_030 0.1452847945 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
16 Hb_001163_040 0.1466745065 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
17 Hb_006452_110 0.1469994393 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
18 Hb_001268_050 0.147816746 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
19 Hb_001252_210 0.1481662575 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
20 Hb_000342_160 0.1485506197 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_000340_520 Hb_000340_520 Hb_002078_260 Hb_002078_260 Hb_000340_520--Hb_002078_260 Hb_000635_070 Hb_000635_070 Hb_000340_520--Hb_000635_070 Hb_082006_010 Hb_082006_010 Hb_000340_520--Hb_082006_010 Hb_000125_010 Hb_000125_010 Hb_000340_520--Hb_000125_010 Hb_000733_080 Hb_000733_080 Hb_000340_520--Hb_000733_080 Hb_030982_020 Hb_030982_020 Hb_000340_520--Hb_030982_020 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_132180_010 Hb_132180_010 Hb_002078_260--Hb_132180_010 Hb_002078_260--Hb_082006_010 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_004669_030 Hb_004669_030 Hb_000635_070--Hb_004669_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_002562_110 Hb_002562_110 Hb_000635_070--Hb_002562_110 Hb_082006_010--Hb_002562_110 Hb_082006_010--Hb_009270_030 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_000125_010--Hb_082006_010 Hb_001747_030 Hb_001747_030 Hb_000125_010--Hb_001747_030 Hb_002735_050 Hb_002735_050 Hb_000125_010--Hb_002735_050 Hb_003352_040 Hb_003352_040 Hb_000125_010--Hb_003352_040 Hb_002259_160 Hb_002259_160 Hb_000125_010--Hb_002259_160 Hb_001268_050 Hb_001268_050 Hb_000125_010--Hb_001268_050 Hb_001252_210 Hb_001252_210 Hb_000733_080--Hb_001252_210 Hb_006452_110 Hb_006452_110 Hb_000733_080--Hb_006452_110 Hb_019762_020 Hb_019762_020 Hb_000733_080--Hb_019762_020 Hb_000023_290 Hb_000023_290 Hb_000733_080--Hb_000023_290 Hb_003894_080 Hb_003894_080 Hb_000733_080--Hb_003894_080 Hb_003929_270 Hb_003929_270 Hb_000733_080--Hb_003929_270 Hb_011214_100 Hb_011214_100 Hb_030982_020--Hb_011214_100 Hb_098852_010 Hb_098852_010 Hb_030982_020--Hb_098852_010 Hb_030982_020--Hb_041205_010 Hb_030982_020--Hb_132180_010 Hb_030982_020--Hb_009270_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.5014 5.85383 36.2366 287.673 38.0591 184.523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
119.196 155.98 129.467 101.956 38.136

CAGE analysis