Hb_000023_290

Information

Type -
Description -
Location Contig23: 514786-515088
Sequence    

Annotation

kegg
ID rcu:RCOM_0920540
description steroid binding protein, putative (EC:1.3.1.74)
nr
ID XP_002515400.1
description steroid binding protein, putative [Ricinus communis]
swissprot
ID Q9SK39
description Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1
trembl
ID B9RNT1
description Steroid binding protein, putative OS=Ricinus communis GN=RCOM_0920540 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable steroid-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23960: 510576-514133 , PASA_asmbl_23961: 514709-515535
cDNA
(Sanger)
(ID:Location)		 003_I23.ab1: 514739-515250 , 017_A20.ab1: 514711-515250 , 027_G21.ab1: 514736-515266 , 028_M21.ab1: 513824-514061

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_290 0.0 - - steroid binding protein, putative [Ricinus communis]
2 Hb_002133_020 0.116184277 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000016_060 0.1236731434 - - mads box protein, putative [Ricinus communis]
4 Hb_004176_070 0.1253652147 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
5 Hb_000733_080 0.1273412188 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
6 Hb_000359_090 0.1281283092 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
7 Hb_001747_030 0.1295371974 - - hypothetical protein F383_08210 [Gossypium arboreum]
8 Hb_000384_070 0.1303350686 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002735_050 0.1328275238 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
10 Hb_000417_100 0.1401123482 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
11 Hb_002344_130 0.1421084044 - - PREDICTED: copper transporter 5 [Jatropha curcas]
12 Hb_006153_030 0.1440959546 - - PREDICTED: probable transaldolase [Jatropha curcas]
13 Hb_000167_080 0.1473181874 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
14 Hb_000429_050 0.1474207416 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
15 Hb_000136_100 0.148631924 - - PREDICTED: syntaxin-61 [Jatropha curcas]
16 Hb_000125_010 0.1503075054 transcription factor TF Family: mTERF -
17 Hb_000066_090 0.1511552707 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
18 Hb_006452_110 0.1512440879 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
19 Hb_148130_020 0.1514414206 - - -
20 Hb_001252_210 0.1525113614 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000023_290 Hb_000023_290 Hb_002133_020 Hb_002133_020 Hb_000023_290--Hb_002133_020 Hb_000016_060 Hb_000016_060 Hb_000023_290--Hb_000016_060 Hb_004176_070 Hb_004176_070 Hb_000023_290--Hb_004176_070 Hb_000733_080 Hb_000733_080 Hb_000023_290--Hb_000733_080 Hb_000359_090 Hb_000359_090 Hb_000023_290--Hb_000359_090 Hb_001747_030 Hb_001747_030 Hb_000023_290--Hb_001747_030 Hb_002133_020--Hb_001747_030 Hb_000384_070 Hb_000384_070 Hb_002133_020--Hb_000384_070 Hb_000258_240 Hb_000258_240 Hb_002133_020--Hb_000258_240 Hb_002133_020--Hb_000359_090 Hb_019181_030 Hb_019181_030 Hb_002133_020--Hb_019181_030 Hb_002781_030 Hb_002781_030 Hb_002133_020--Hb_002781_030 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_148130_020 Hb_148130_020 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_002960_130 Hb_002960_130 Hb_000016_060--Hb_002960_130 Hb_005000_330 Hb_005000_330 Hb_004176_070--Hb_005000_330 Hb_002042_150 Hb_002042_150 Hb_004176_070--Hb_002042_150 Hb_004176_070--Hb_000384_070 Hb_004230_020 Hb_004230_020 Hb_004176_070--Hb_004230_020 Hb_045003_010 Hb_045003_010 Hb_004176_070--Hb_045003_010 Hb_000167_080 Hb_000167_080 Hb_004176_070--Hb_000167_080 Hb_001252_210 Hb_001252_210 Hb_000733_080--Hb_001252_210 Hb_006452_110 Hb_006452_110 Hb_000733_080--Hb_006452_110 Hb_019762_020 Hb_019762_020 Hb_000733_080--Hb_019762_020 Hb_003894_080 Hb_003894_080 Hb_000733_080--Hb_003894_080 Hb_003929_270 Hb_003929_270 Hb_000733_080--Hb_003929_270 Hb_000429_050 Hb_000429_050 Hb_000359_090--Hb_000429_050 Hb_000359_090--Hb_000258_240 Hb_000359_090--Hb_002781_030 Hb_000359_090--Hb_000384_070 Hb_004032_030 Hb_004032_030 Hb_000359_090--Hb_004032_030 Hb_000125_010 Hb_000125_010 Hb_001747_030--Hb_000125_010 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_000111_030 Hb_000111_030 Hb_001747_030--Hb_000111_030 Hb_001747_030--Hb_002960_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.836 127.12 81.9475 663.551 102.312 214.753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
369.082 319.12 147.532 181.619 124.563

CAGE analysis