Hb_004230_020

Information

Type -
Description -
Location Contig4230: 39250-41649
Sequence    

Annotation

kegg
ID cit:102625821
description myosin-2-like
nr
ID XP_012089792.1
description PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00431 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41858: 39477-40478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004230_020 0.0 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
2 Hb_045003_010 0.0979714719 - - Stomatin-1, putative [Ricinus communis]
3 Hb_002301_160 0.1003348936 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
4 Hb_004176_070 0.1050715384 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
5 Hb_000849_130 0.1062176256 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
6 Hb_005460_060 0.1080069743 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
7 Hb_002042_150 0.1102406246 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
8 Hb_000384_070 0.1108920454 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000009_290 0.1151120883 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
10 Hb_000392_340 0.1160702128 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
11 Hb_154948_040 0.1167372777 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
12 Hb_000110_120 0.1170393547 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
13 Hb_002314_010 0.1199681152 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
14 Hb_000946_090 0.1202730717 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
15 Hb_001377_450 0.1215496482 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_002995_050 0.1235975367 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
17 Hb_001322_070 0.1241732128 - - protein with unknown function [Ricinus communis]
18 Hb_000365_270 0.1246236163 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
19 Hb_005000_330 0.1248501336 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000327_380 0.1250728431 - - hypothetical protein JCGZ_06621 [Jatropha curcas]

Gene co-expression network

sample Hb_004230_020 Hb_004230_020 Hb_045003_010 Hb_045003_010 Hb_004230_020--Hb_045003_010 Hb_002301_160 Hb_002301_160 Hb_004230_020--Hb_002301_160 Hb_004176_070 Hb_004176_070 Hb_004230_020--Hb_004176_070 Hb_000849_130 Hb_000849_130 Hb_004230_020--Hb_000849_130 Hb_005460_060 Hb_005460_060 Hb_004230_020--Hb_005460_060 Hb_002042_150 Hb_002042_150 Hb_004230_020--Hb_002042_150 Hb_045003_010--Hb_002042_150 Hb_001353_010 Hb_001353_010 Hb_045003_010--Hb_001353_010 Hb_154948_040 Hb_154948_040 Hb_045003_010--Hb_154948_040 Hb_000566_120 Hb_000566_120 Hb_045003_010--Hb_000566_120 Hb_006326_040 Hb_006326_040 Hb_045003_010--Hb_006326_040 Hb_002995_050 Hb_002995_050 Hb_045003_010--Hb_002995_050 Hb_002045_070 Hb_002045_070 Hb_002301_160--Hb_002045_070 Hb_000110_120 Hb_000110_120 Hb_002301_160--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_002301_160--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_002301_160--Hb_004627_030 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_005000_330 Hb_005000_330 Hb_004176_070--Hb_005000_330 Hb_004176_070--Hb_002042_150 Hb_000384_070 Hb_000384_070 Hb_004176_070--Hb_000384_070 Hb_004176_070--Hb_045003_010 Hb_000167_080 Hb_000167_080 Hb_004176_070--Hb_000167_080 Hb_000849_130--Hb_000009_290 Hb_000849_130--Hb_154948_040 Hb_002105_100 Hb_002105_100 Hb_000849_130--Hb_002105_100 Hb_000849_130--Hb_045003_010 Hb_002303_060 Hb_002303_060 Hb_000849_130--Hb_002303_060 Hb_000783_010 Hb_000783_010 Hb_000849_130--Hb_000783_010 Hb_005460_060--Hb_000110_120 Hb_004984_030 Hb_004984_030 Hb_005460_060--Hb_004984_030 Hb_098315_020 Hb_098315_020 Hb_005460_060--Hb_098315_020 Hb_000077_180 Hb_000077_180 Hb_005460_060--Hb_000077_180 Hb_002060_010 Hb_002060_010 Hb_005460_060--Hb_002060_010 Hb_000946_090 Hb_000946_090 Hb_005460_060--Hb_000946_090 Hb_004109_340 Hb_004109_340 Hb_002042_150--Hb_004109_340 Hb_000179_270 Hb_000179_270 Hb_002042_150--Hb_000179_270 Hb_002042_150--Hb_000384_070 Hb_011344_120 Hb_011344_120 Hb_002042_150--Hb_011344_120 Hb_004108_220 Hb_004108_220 Hb_002042_150--Hb_004108_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.53711 6.70749 14.5996 25.6183 6.6532 7.48427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6581 23.0727 8.25414 6.75993 6.52263

CAGE analysis